BtaINT0025069 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57157894-57158891:+
Coord C1 exon
chr5:57157894-57158040
Coord A exon
chr5:57158041-57158664
Coord C2 exon
chr5:57158665-57158891
Length
624 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CACCTTTTTCTTATCCTCAGCAG
3' ss Score
7.09
Exon sequences
Seq C1 exon
ACCTGTCTAGTCTGCCGGAAGGGTGACAACGATGAGTTTCTTCTACTTTGTGATGGGTGTGACCGTGGCTGCCATATTTACTGCCTTCGGCCCAAGATGGAGGCTGTCCCAGAAGGAGACTGGTTCTGTGCTGTCTGTCTGGCCCAG
Seq A exon
GTACGTCTTCTGCTCTCTGAGTCCACTCCCGAGCAAGTCAGAGGTTTTCTTTCTCATCCCATTTACCACCAGTCTTAAAAATATCATTCTTCCCATGCCTTCCATCTCTCCTGGGAAAAGGTTCCAGATGACGTGCTAGGCGACCTGGGTTCCAGTCCTTTTTTGCACAAGTCACTTAAATTTTACCACCTTACTTGTTTTCCTTGTAAAATGGGAGTGATTATACTTTCCTTTTTCACATAACCCAAAACGGTGAGTAATAAATTCACAGACTGACTTACGCATGAAAGTATTTTGAAACCTCAGTCACACTCAGACAAGTAGTACTATGTTAAGTCACTTTAGTCGTGTCCAACTCTTTGCAATCCTGTGGACTATAGCCTGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGCATCTTCCTGACCCAGAGATCAAACCCACGTCTCCTGCATTGGCAGGTGAGTTCTTTACCACTTGTGCCACTTGGGAGGCCCCCAGACAAGTAGGGATTGTGATAAAGTAGAGAGCAAGCAGAGTATGTATTTCCAGCTGTGGCTGATTTCACCTTTTTCTTATCCTCAG
Seq C2 exon
CAGGTAGAAGGAGAATTGACTCAGAAATCTGGTTTCCCAAAACGAGGCCAGAAGCGGAAAAGCGGTTATGTGCTGACCTTCCCAGAGGGTGACAACCGCCGGCGCCGGCTGCTACCAAGGGGCCGAGAGAGCCCAGCAGTGCCCCGGTACTCAGAGGAAGGGCTGTCCCCCTCGAAGCGGCGGCGCGTCTCCATGCGGAACCATCACAGTGATCTCACATTCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.408
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGGTGACAACGATGAG
R:
TCACTGTGATGGTTCCGCATG
Band lengths:
344-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]