DreINT0038110 @ danRer10
Intron Retention
Gene
ENSDARG00000022280 | brd2a
Description
bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
Coordinates
chr19:7244867-7247533:+
Coord C1 exon
chr19:7244867-7245129
Coord A exon
chr19:7245130-7247210
Coord C2 exon
chr19:7247211-7247533
Length
2081 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
ACTTATTTCTTTTTCCTCAGGTC
3' ss Score
11.35
Exon sequences
Seq C1 exon
TTGAGGGCCGTTCATGAGCAGCTGGCGGCGCTGTCCTCCACGCCCATCATCAAACCCAAGAAGAAGAAGGAGAAGAAAGACAAGAAGAAGAAAAAGAAGCCGGAGAAGCATAAGCGAAGCAGGAGCGTGATTGAGGATGAGGTGGTCATGCGGCCGGCCAAGATCCCCAAACTCCCCAAGACACCAAAGAGCAGGAGCAACAGCAAAGCGGCGACGTCAACGCAGAGCAAGAAGAGCTCAAACAAGAAGAGCAACAAGAGCAA
Seq A exon
GTACGTCTCCGTTCACCCTATTTACCAGGGTTTTACAAGTCCGATTCAAGAGTAAAAATTTAGGCCTTCATTTTCACTGAAGTATTGTGTATAGGCAGTGGTGGAAAGGGTACTGAAAAAGCATACTCAAGTAAAAGTACCGTTACTTGCCTAAAAATGTAAAGCGAGTAAAAGTATCTATTGTAAATATTACTGAGTAAAAAGTAGAGCTGTCTAAAGAACTCGAGTAGTGAGTATTACACTGTAAAAAGCTGATGCGTTTACGTAATTTGTGGATGTGTAAACGTAACATTCTATAGTGCATTTAGTGTGTGCTTGCTGGGCAATAAATGTCATAAGACATTAATATTAGGTTAGATTTAGGTCATGGCGTCAGATGAACGAAATTCATCGTCTATCCAATGTCTATAGACAACATTATTTTGATGTCCAATAATTAAATCAAATGATGTTGATATTTGTTTGATTTTAGGTTGTTAGAAAGTTACTAAAATCCAACATTGAGCCAACATCTTAAACCAACGTCGTATTGATGGCAAATACTGACATTTACTTATCAGATACGACAACCAAAATCCAACATCTAATAGAGGGCATAGTGGTAACATCCACACAATGTCAAGCTGTAACATTAGTCGTTGATATTTGGTTGATTTTAGGTCGGACATTGACGTCGGCATGAAGTTGGGTTTTGAGGTCAACTGTATTTTCATTTCCAAACAAAATGCAACGTCTCTACTATGTTGGGGTACAATGTCAATCTAATGATGTGTGTCTGCTGGGTGTTTTAGGCCATTTTGATCATCATGCAGTAAACACTCGTCATCTTCTCATCAGTGATATGCTTCCAAACAGTTTCTAGGTGAATGTGTGCAAATCTTCATGGACACCTTTAATTCTTTCAAACAGTTTGCTGCAATTATTAATCGCACATTTCTTGAGGTAGTTCATTAAGATGCGATTTACCTTCCATGTGCTTATTACAGTAAAACTCGATGGTATAGCTGAGCACAGAGGAATTGTATATCAAATGGAATTTAATGGGTTACATTTTATGGAAAAAAAAATAACGTTTTGATTTATTTCAGGGGTACATCTTGCATTGTTTACTGATATTTTGACCAATTAAATTTAACAGAAGGCCTTTCAGGCTCATTTTATAGCAATAAAGAATAAGGTCACTGACCAGTGGTGCTGCAAACCCACCAATGACTGTTTGTTGCAGGGACATACAAAAGTCTAACTTAAGAGAGACGTTCTTTTGTAAATGTAATTGAATAATTTAGGCCACATTTTTATGCAACCAAGCAAACCACATGCTTATTATATTAATCAAGGCCATAATGTTTGCCAATAAGTGCAAAGATAATCCAGATGCCCCGAATATGAATCAGGCGTAATACTCAATTCTCCAATTCTCAAATTAAAACCTGCAGAAAGCCAGACGTGCTGAAATTTGAGTTTAGACATTTTAATCATAAAAATGTATTCAAGCCAGAACGAGAGTATAGTGCCTTGACATATCAGCCTAAAAAACAGCAAAACTTTTAATTGTCTGTCTGTCATGGTACACAATGTAACTACAGAAGAATCAGATTTAAATATTTAATAAATATAATTTTTAAAAAAATATTGAAACTCAGACATTTTTGAGTGAGATGCTAACGGTCTAATCTGATTCAATGATCTATGATAAGCTAAGCTAATAGTTCCCCCGCCAGATCCTGAGATCAGCTGAATGGGAAAAAAATGGTAAAACTCTGTTGTTTAACTGGGGGGCTGTAAAATGAGCCAATTTTCAGAAAATCAGGTTTAAGACTCCCTTAAATGCCCCAACAGTTCTTTAAAATATTCATTGTCTGAATATGTGTTGTATATATTGAGATGTAGTTTGTTTATTAGTCCAAATATACATTATTACAACTACAAACGAGACTAAAAATGTAATTCTCAATCTCAAATACTATTCATAAATAAATAAAGTTTTAAAATGGACTTGGTCAAGCCTGCAGAAACCCAGACTTGCTGAAATAAGTCAGTTTAGAAATCTTAATCACTAAAACTTATTTCTTTTTCCTCAG
Seq C2 exon
GTCATCAAAGAAAGCTCAGCCCACGTTTTTCCCACCGCCACTGAGCCACAGTGGCCTCACACCTCACTACGACTCCGAGGAAGAGGAGGAAACCAGTCCCATGAGCTACGACGAGAAGCGGCAGCTCAGTCTGGACATCAACCGTCTGCCGGGGGAAAAACTGGGCCGCGTGGTTCACATCATCCAGTCCAGAGAGCCCTCGCTGAGAGACACCAACCCTGAGGAGATCGAGATCGACTTCGAGACCCTCAAACCATCCACACTGAGAGAGCTGGAGCGCTACGTAATGATGTGCTTACGAAAGAAACCACGCAAACCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022280:ENSDART00000035967:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]