HsaINT1005383 @ hg38
Intron Retention
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32978126-32980132:+
Coord C1 exon
chr6:32978126-32978388
Coord A exon
chr6:32978389-32979827
Coord C2 exon
chr6:32979828-32980132
Length
1439 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ACAACTCTTTTTGCCCTTAGGCT
3' ss Score
9.5
Exon sequences
Seq C1 exon
CTTCGGGCAGTACATGAACAACTGGCTGCTCTGTCCCAGGGTCCAATATCCAAGCCCAAGAGGAAAAGAGAGAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGCCGATGAAGATGACAAGGGGCCTAGGGCACCCCGCCCACCTCAACCTAAGAAGTCCAAGAAAGCAAGTGGCAGTGGGGGTGGCAGTGCTGCTTTAGGCCCTTCTGGCTTTGGACCTTCTGGAGGAAGTGGCACCAA
Seq A exon
GTGAGTTAGAGTAGGAAGCAGAGACTAGTTTGGCTATTTCTGTCTCTCTGGGGGATGCCATCTCTCTTTGCAAAGATAATTCTAAATGGCCAGTTAACAGATACAATAGGCTTTGAGCAGTGGTCCCCAACCTTTTTGGCACCAGGGACCAGTTTCGTGGAAGACAGATTTTACCACAGACAGGGTTTGAGGGGATGGTTTTTGGGATGAAACTGTTCCACCTCAGATCATTGGGCCATTGGATTCCCATAAGGAGCATGCAGCCTGGATATGTACCATGCGCACTTCACAGTAGGGTTCATGCTTCTATGAGAATCTAATGCTTCTGCTGATGTGACAGGCAGTGATGCCCACATGCCGGCTGTTCACCTCCTGCGTAGCCCAGTAACAGGCCACGGACTGGTACTGGTCTGGGGGTTGGGACCCCTGGCTTTGGGAGTCAGGGTGTTTCACAGCTACTCTGACAGTGAACTCAAAGTAGCCATAAACTAGAAACATGAAGATGGCTGTGTTCCAAAAAGACTTTATTTGCAAAGACACGTGGCGATCAGATTTGTTCTCTGGGCCATATAGTTTGCCTGTTGCTCTAAATCAATGAGTCTAGACTTGTTTTTCATGGCGTAGTAGTTTTTGGTTTTTTGGTGTGGTTTTGTGTTTTGTTTTTTTTTGTTAGTTTGTTTTTTGTTTTGTTTTTTTTAAAGACTCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTTACTGCAACCTCCACTTCTCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCCAGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTGCGCAGCTAGTTTATGTAGTTTTAGTGGAGACGGGGTTTCGCCATGTTGGGCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAAATCTGAGCCACTGCAGCTGGCCCATGGTGTAGTTTGGTAGTGTTTAAGGGAGCAGAAAGACCCATGTCAGTATACCTAAACAGGTATACCTTGTTTTATTGTGCTTCACTTTACGGAGTTTTTTTTAGATACTACTTTTTTTTTTAGTTGAAGATTTGTGACAACCCTGTGTGGAGCAAGTCTTTCAACAGTTTTTCCAACATGTTTGTGTGTCACATTTTTAGTAATATTTTTTCATTAAGGTATGTACGTACATTGTCTTTTTAAAGACATGTTATTGCCTACTTACAGTCGAGCAAAATGCTCTGTTTCACTATACAGTGTCCCAGTAGCCCACCTCTTACTTGGCCATTGAATGGAAAAACAGAAGCTCCACTCTGGGCAGGAAATAGGATCACTGAATTATAACAGTGGGAACATACTGGAAGAGGTTAATGAAGCTTCTTTTGCTGACAACTCTTTTTGCCCTTAG
Seq C2 exon
GCTCCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTACAGGTTATGATTCAGAGGAGGAGGAAGAGAGCAGGCCCATGAGTTACGATGAGAAGCGGCAGCTGAGCCTGGACATCAACAAATTACCTGGGGAGAAGCTGGGCCGAGTTGTGCATATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTCAAACCCAGAAGAGATTGAGATTGATTTTGAAACACTCAAGCCATCCACACTTAGAGAGCTTGAGCGCTATGTCCTTTCCTGCCTACGTAAGAAACCCCGGAAGCCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256:ENST00000374825:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.782
Domain overlap (PFAM):
C1:
PF062137=CobT=PD(5.4=30.8),PF045468=Sigma70_ner=FE(27.8=100)
A:
NA
C2:
PF090735=BUD22=PD(13.0=40.8)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTCCAATATCCAAGCCCA
R:
TTGTTGATGTCCAGGCTCAGC
Band lengths:
352-1791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains