DreINT0041094 @ danRer10
Intron Retention
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42561684-42563136:-
Coord C1 exon
chr13:42563071-42563136
Coord A exon
chr13:42561742-42563070
Coord C2 exon
chr13:42561684-42561741
Length
1329 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
AGTTTATATATTTATTTTAGGAT
3' ss Score
8.3
Exon sequences
Seq C1 exon
GAAGAAATTACAGAAGATGACATTGATGACTCCTTTAAGTCCCTGTTTGCCCAGCTGGCTGGAGAG
Seq A exon
GTGAATACATACTTACATCTTTCTACTTTACAAAAATAGGGCGGCAATGTGGCTCAGTGGTTAGCACTGTGGCCTCACAGCAAGAAGGTCAATAGCCGCGGGCCAGTGCGAGCCAGGGCTTTTATCGGGCCAGGCCGGGCCAATCGCCCGGGAGGTTGAGCAGTGAGGCCGAAATCATGTCGCGTTTCCACTGTCGGGCTAGTAGCTCGCAGCGCGTCACGTAAACCCCGCCCCCTGAACATCTCCCAAATCGAACGTCACTCTGTCCGCCCACTTCAGCGGGAATCAGGCAGATAAAGCACATCACATCATCATGAAACTATTCAAATTAGGACAACCAAATGACACGTTACTGTACAGCAGTACAATGTATGTCTATACGCACATGCCTGTGTGTTCTCATTCATCATTTACTCGCCGACGCCGACCGACTGTTGGCATCGAAATCCAATGGTCTTGCCACTAACGGAGGGACCCAGCGCAGGGAGCGCACACATCCATAATATAAAACCACATATATAAAATTCTCCATTAATAACTCGATATAAAATGTATTTTATAACATCCTCAGTTAGACAGACGCAGTCCAACATTCAGCCCAAATGCTCCGGAGAGAACTGAAACATGAACTTTTCCAGATGTTTCTTGCCCTTATTTATTTATTTGTTTATTTGTTTGGCACATGTACTCATGTGTGATCGGAAAACTGTGCCCGCCTCTCCTTTCACTCCGCCCTGAAGCCCCGACTGGCCCTCTTTGGCCCAAGGTATTCGGCGGGCCGAAAAAGGCCGACCGCTGGCCCCAAGAAAGCCCCGATTTGGCCTGATTAGGCCCCGGAAGTGACAGTGGAAACGCGACTGGCCTTGGCTCGCCCTGGCTCGCTCGCTTTAGGCGCGATAGTGGAAACGCGGCTAATGTTTCTAGTATTGGCTGGGCCAGTTGGCTTTTTTTCTGTGTGGTGTTTTGCATGTTCTCCCCGTGTTCATGTGGGTTTCCTCCGAGTGCTCCACAGTCCAAAGACATGCGGTATAGGTGAATTAGATTAACTAAATTGCCCTAGTGTATGAGTGAGTGATTTCCAGTTCTGGGTTGCAGCTGAAAGGGCATCCGTTGAGTAACGCATATGCTGGAATAGTTGGCGGTTCATTCCACTGTGGCGACGCCTGATAAATAAGGGACCAAGCTTAAGGAAAATGTATGAACGAATGTTCTGTGGTTTATTGTATGCTTTATTTTTATTTTTTATTGTTTATTGATTAAGCCGAAGGAAAATGAATGAAATCATGTACAAAAAATAGTATTTGAATGTAGTTTATATATTTATTTTAG
Seq C2 exon
GATATGGAGATATCTGTTCATGAACTCAAGACTATTCTCAACAGAGTAGTCTCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702:ENSDART00000046066:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]