DreINT0041427 @ danRer10
Intron Retention
Gene
ENSDARG00000067672 | card9
Description
caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
Coordinates
chr5:50513774-50516227:-
Coord C1 exon
chr5:50515902-50516227
Coord A exon
chr5:50513954-50515901
Coord C2 exon
chr5:50513774-50513953
Length
1948 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATC
5' ss Score
3.49
3' ss Seq
TCCTCGGGCCTTGCTAAAAGATC
3' ss Score
3.05
Exon sequences
Seq C1 exon
ACACTGCTGGTGAATGCGGCCTCACTCAGTTCCTCATGAGCGAGGTGTCTCGTCTGCAGAAGCTGGCGCAGGATGAGCGGAGGGCCCGACTGGAAGTATCTGCACAGGTAAAGGAGCAGCACGAAACCATCCGCCAGCTGCAGCTGTGTGAAAATGAGCTGCACAAACAGCAGGAGCGTGTGCACCGCATCCGAGAAGAGCGCGAGCGCATGTGTGAGGAGGCTCGGACACTGAAAGATGAGAATTACCGACTGATGCACGATCTGACTCGACTGAGCGAAGAGAAGAACTGCGCGCTCATGTGTAACAGAGACCTCCAGCTAGAG
Seq A exon
GTGATCAATCAATTTGAACATAGTTCATCACAACCTTTAAACAAATATATGCAAATGTACATTTTATAATTTACATATAATTTATGATTTTAACTGTAATAAAGTGTTGTAATAATGATATTCTTTGTAGTGAAGCTTATAATTTAGCAAACTCAAAAACTGTGGGGTTATTTTAAAAATTAGCTCTGTGACCAAAAGAAGTTACATGTCCTTCACAAACAAGCACATCATTTAATATATATAAGCTGCTTTGATTCTAGCCGAAATAAAACAAATAAGACTTTTTTCCAGAAGAAAAAACATTGTCAGACATACTGTAAAATGTCCTTGCACTGTTTGGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGGAAAAAGCTATTCAAAGGGGGGCTAATAATTCTAACTTGAATTGTTTGTATATATACAGTTGAAGTCAGAATTATTAGCCCCTCGGAATTATTAGACCCCCTATTTATTTTTTTTCCCCTAGTTTCTGTTTAATGGAAAGACACATTTCTGTTTCAACACATTTCTAAACATAATAGTTTTATTAACTCATTTCTAATAATAATTTATTTTATCTTTGCCATGATAACAATAAATAATATTTTACTAAACATTTTTCAAGACATTTCTATACAGCTTAAAGTGACATTTAAAGACTTAATTAGGTTAACTCTGCAAGTTAGGGTAATTAGGCAGGTTATTGTATAACAATGGTTTGTTCTGTAGACTATTGAAAAAAAAAGGTAATAATTTTGACCCTAAAATGGTTCATAATAAATTAAAATTTGCTTTTATTCTAGCCAAAATAAAACAAATAAGACTTTTTTTCAGAAGAAAAAAAATATCAGACATACTGTAAAAATTTCTTTGCTCTGTTAAACATTATTTGGAAAATATTTTTAAAAGAAAAGAAAAGTCAAAGGAGGGTTAAAAATTCTGACTTCAACTGTATATGCACAAGCACATACAGTAACTTTTAGTTAGTTTGAAGCCTAAATATAATCACAAGAAGTAGCCTAAACTATGCTGCATGAGTATGTTTAACTAGTGCATTCATACCAAATCAAAATGATCACAGTTACAAAATTTTACATTCACTTTTGTGCAGAACTTGCTCTAAAAATCGGTAAAATACCATTTAAACTGATATGTTCACACCATATCAGAATCACTGTAGCAACAAGATTAACACTAGTAAAAAACATTCATGTATTCACAGGCTTTGTAATAACAAGTTGTGAACTAGGATATTCGAGTGTGTTCATACTGTATTATAATTATTCTTTATTACAAACATTACATTTTTAGATGCATTCACACAATCAGAATTGCTATAATTAGGCGATTATGGCTAACAAAAAGCACTCACATCCATGTTAAACTTATAACCACAGTTTGAAAACTGAATTTTAGGTGCATTCACATAATTATTTACCATTATAACGAGATTCAAATAAGTAAAAAATGACCATGTGGCTGCTGTAGAATTAATTGAATTTAATTTAATAAATTGAATCTGAGGACATGAACAGCTATAAGTAAAACATCATGTTTTTATCTTACAATTACAGTAATAATAACATAGTATGAAAACACTGTTGATTTTGTAGTTATATTACTACAAATGTATATGTTATAAAATACAACCTAAAGCTAAAATGCTAGCTTATTAAAATTAGCATGCATTAGGCTACACACAAATCTTTCTAGTACTCTGTTAATGTATATGAATTTTAAGTTTGCTGTTATGATAATTTGCTTAAACATTACATTCGATTCTTTGTGTTTTATGTATTTATTATTGTTTATTATCTTCATTTTATCTTTGCATGTTTTCCTCTCCTCGGGCCTTGCTAAAAG
Seq C2 exon
ATCGAGAAATTAAAACACAGCTTAATGAATGCCGAAAGTGATTCAAAGATTCAACGGAAAAAGACTGTAAACTTGAAAAATGCCATGGAGCAAAGGCCGAGTCCAGAGATCATCTGGAAGATGCAGAGACAAAACGACCTCCTTAAAGCTCGCATACAAGAGCTCGAAAGTGCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067672:ENSDART00000097471:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACTGGAAGTATCTGCAC
R:
GATGATCTCTGGACTCGGCCT
Band lengths:
356-2304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]