HsaINT0027760 @ hg38
Intron Retention
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr9:136370522-136371145:-
Coord C1 exon
chr9:136370841-136371145
Coord A exon
chr9:136370702-136370840
Coord C2 exon
chr9:136370522-136370701
Length
139 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
GCTCACTGGACCTTCTGCAGATT
3' ss Score
5.76
Exon sequences
Seq C1 exon
ACGCGTCCGGGGAGTCAGGCCTGACTCAGCTGCTGATGACTGAGGTCATGAAGCTGCAGAAGAAGGTGCAGGACCTGACCGCGCTGCTGAGCTCCAAAGATGACTTCATCAAGGAGCTGCGGGTGAAGGACAGCCTGCTGCGCAAGCACCAGGAGCGTGTGCAGAGGCTCAAGGAGGAGTGCGAGGCCGGCAGCCGCGAGCTCAAGCGCTGCAAGGAGGAGAACTACGACCTGGCCATGCGCCTGGCGCACCAGAGTGAGGAGAAGGGCGCCGCGCTCATGCGGAACCGTGACCTGCAGCTGGAG
Seq A exon
GTGCGCCCGCTGCCCCCGGGAAACCAGGCCACCCTCGCCTGGCCTGGCGGGGTCTGCAGGCCGGGGCGGTCGGGGGTGGCCCCACGGGTCTGCGGTCACCGCCTGGAGGGGACAGCCAGGCTCACTGGACCTTCTGCAG
Seq C2 exon
ATTGACCAGCTCAAGCACAGCCTCATGAAGGCCGAGGACGACTGCAAGGTGGAGCGCAAGCACACGCTGAAGCTCAGGCACGCCATGGAGCAGCGGCCCAGCCAGGAGCTGCTGTGGGAGCTGCAGCAGGAGAAGGCCCTGCTCCAGGCCCGGGTGCAGGAGCTGGAGGCCTCCGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796:ENST00000371734:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGAGCTCCAAAGATGA
R:
TTCATGAGGCTGTGCTTGAGC
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development