RnoINT0029384 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3803485-3804036:-
Coord C1 exon
chr3:3803732-3804036
Coord A exon
chr3:3803665-3803731
Coord C2 exon
chr3:3803485-3803664
Length
67 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
GCTGACTGGACCACCCGCAGGTG
3' ss Score
5.4
Exon sequences
Seq C1 exon
ACGCATCAGGGGAGTCGGGCCTGACGCAGCTGCTGATGACAGAGGTCATGAAGCTGCAGAAGAAGGTTCAGGACCTGACGGCCCTTCTGAGCTCCAAGGATGACTTCATCAAGGAGCTGAGGGTAAAGGACAGCCTCCTGCGCAAGCACCAGGAGCGGGTGCAGCGGCTCAAGGAGGAGTGTGAGCTGAGCAGTGCCGAGCTGAAGCGCTGCAAGGATGAGAACTACGACCTGGCCATGCGCCTGGCTCACCTGAGTGAAGAGAAGGGAGCAGCACTCATGCGGAACCGTGACCTGCAGCTTGAG
Seq A exon
GTGATGGCTCACTCCACAGGCAGCGGGGTGGTCAGGAGGAGGCTGTGGCTGACTGGACCACCCGCAG
Seq C2 exon
GTGGACCAGCTCAGGCACAGCCTCATGAAGGCAGAGGATGACTGCAAGGTGGAGCGCAAACACACACTGAAGCTCCGGCACGCCATGGAGCAGCGGCCTAGCCAGGAGCTGCTGTGGGACCTGCAGCAGGAGAGGGACTTGTTGCAGGCCCGGGTGCAGGAGCTGGAGGTCTCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAACTACGACCTGGCCA
R:
CCGGAGCTTCAGTGTGTGTTT
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]