DreINT0041428 @ danRer10
Intron Retention
Gene
ENSDARG00000067672 | card9
Description
caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
Coordinates
chr5:50513557-50513953:-
Coord C1 exon
chr5:50513774-50513953
Coord A exon
chr5:50513701-50513773
Coord C2 exon
chr5:50513557-50513700
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ACTGCAATTCATTCACACAGGTT
3' ss Score
6.33
Exon sequences
Seq C1 exon
ATCGAGAAATTAAAACACAGCTTAATGAATGCCGAAAGTGATTCAAAGATTCAACGGAAAAAGACTGTAAACTTGAAAAATGCCATGGAGCAAAGGCCGAGTCCAGAGATCATCTGGAAGATGCAGAGACAAAACGACCTCCTTAAAGCTCGCATACAAGAGCTCGAAAGTGCTTCCAAG
Seq A exon
GTAAATCAGGCTCACTTATTACAGACTTCCTCAGAATATGAATAACAGTGACTACTGCAATTCATTCACACAG
Seq C2 exon
GTTCAAACTCCTGAGCAGGAAAAGCCTGATTCACAGACATTAGAGGATTTCAAGCAACAAAGTCAGGCACAATACCAAGAGCTGGTGAATGATCTCTACAATCTAAGAAGAGATCTTCATGATGCAGAAAAGCTGCGTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067672:ENSDART00000097471:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGAGTCCAGAGATCATCT
R:
CCAGCTCTTGGTATTGTGCCT
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]