RnoINT0029385 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3803206-3803664:-
Coord C1 exon
chr3:3803485-3803664
Coord A exon
chr3:3803350-3803484
Coord C2 exon
chr3:3803206-3803349
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTGTTCCCTGCCACCTCCAGGAG
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTGGACCAGCTCAGGCACAGCCTCATGAAGGCAGAGGATGACTGCAAGGTGGAGCGCAAACACACACTGAAGCTCCGGCACGCCATGGAGCAGCGGCCTAGCCAGGAGCTGCTGTGGGACCTGCAGCAGGAGAGGGACTTGTTGCAGGCCCGGGTGCAGGAGCTGGAGGTCTCCGTGCAG
Seq A exon
GTAGGAATACCACCGGTGCACACCAGGCCTCGCATCTGCATGGGCTTGAAGCTGGGCACACCAGATGGTACAACTGCAGTGGCTGTGGCACTGTGGGCCTCCTCAGCCAGGCTTATTGTTCCCTGCCACCTCCAG
Seq C2 exon
GAGGGTAAGCTACACAGGAATAGCCCATACATCCAGGTGCTGGAGGAGGACTGGCGTCAGGCACTGCAGGAACACCAGGAGCAGGCCAGCACCATCTTCTCCCTACGAAAGGACCTCCGCCAGGCTGAGGCCCTCCGGACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACACACTGAAGCTCCGG
R:
CGGAGGTCCTTTCGTAGGGAG
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]