GgaINT0125931 @ galGal4
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7911383-7911896:+
Coord C1 exon
chr17:7911383-7911562
Coord A exon
chr17:7911563-7911746
Coord C2 exon
chr17:7911747-7911896
Length
184 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TCACATTCTTCTTTGTCCAGCAG
3' ss Score
5.87
Exon sequences
Seq C1 exon
ATTGATAGCTTGAAGCATAGCCTCATGAAGGCTGAGGACGACTGCAAACTAGAGCGTAAGCACTCGATGAAACTGAAGCATGCCATAGAACAACGTCCGAGCCATGAAGTGATGTGGGAGATCCAGCAGGAGAAGGAGCTGCTTTTGGCCAAGAATCAGGAGCTGGAGAACACTCTTCAG
Seq A exon
GTTGGTGGGGGTGACTGGGTGAGGAATCTTCAGAAATGATTATTTTATGCAGTCAGTGCAGTGATGTGATCGTACTGAATACTTTGAGGGTTAGTTATGGCCTTGTTCTCCCAAGTCATACAGAGAGAGCACATCAGACTTCAGAGTTAGATGGTTGCTGTATCTCACATTCTTCTTTGTCCAG
Seq C2 exon
CAGGTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGACTGCAAACTAGAGCG
R:
GTGGTACAGGGTGTTCAGCAG
Band lengths:
253-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]