DreINT0045184 @ danRer10
Intron Retention
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14544526-14544895:-
Coord C1 exon
chr8:14544732-14544895
Coord A exon
chr8:14544637-14544731
Coord C2 exon
chr8:14544526-14544636
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TTAACCTTTGACTCTTTTAGTCC
3' ss Score
7.88
Exon sequences
Seq C1 exon
CAGAGCTCAAGTTTGCTCCTGGGGTCTTGCATCAGCGCCTGTCTGCTGAGCTCAACTACCTGGATGCAGTGGAGGAGTCGGTACGACAGCTCGGTGATGTGGAGAGAGTGAGAGGAGTGTCTCTCGCTCAGCAAGAAACCGTCTCACTTGCACAGATTCTGAAG
Seq A exon
GTGAAGCTCTGCACCTGCTTAAGCAATTATCTCATTTACTGTGACCTTCTGGTCGAGTGATTTAAGAGTGATCTTTTAACCTTTGACTCTTTTAG
Seq C2 exon
TCCCAACAGCAGAGGCATGAGCGTGACCTGTACCTGCTGAGGATGAAGGCAGAGCAGGAAGCCCTTGAAACACAGATGCAGCTGGAAGAAAGCAGACAGAAGGCTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000:ENSDART00000146175:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.703
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGGATGCAGTGGAGGAG
R:
GTGTTTCAAGGGCTTCCTGCT
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]