HsaINT0033792 @ hg38
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180036926-180041248:+
Coord C1 exon
chr1:180036926-180037089
Coord A exon
chr1:180037090-180041137
Coord C2 exon
chr1:180041138-180041248
Length
4048 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ATTTGACCATTATTTTGAAGGCA
3' ss Score
5.29
Exon sequences
Seq C1 exon
GTTCTAAGCGCTTTTCTCCTGCTGGCCTCCATCATCGTATGGCAGCAGAACTCAGTTATCTGAACGCCATTGAGGAGTCGGTGCGCCAACTGTCAGATGTAGAAAGAGTTAGAGGCATTTCACTTGCTCAGCAGGAGAGTGTGTCTCTAGCTCAGATAATAAAG
Seq A exon
GTATTTTTGGAGTTTTTTAGCTTTCTGTGGTTTTTCTTTTTTCTTCGCTATTTAAAATGGTCTTAATGATGACTTAAACTACTGTGTCAAATAGAAAAAAATAGTCTGCCATATAGCACCTATAAATAAATAGTCCTGGGAAAAATCTGTCGGGACACTAAAAAGATACAGTGTTTGGCAGCAGAACAATAATAAAATCATTCTCTCTCAAATACTTTGTTTTCCATGTTTTCTGCTTTGTTTAGTTGACAGTATAAAAATCATCTAGTCAAACATTCTTAATATTTTCTCCTTTCATTGATAGGTGAGAGAATACTGAGGGTTTTTTTTTTTTTTTTTAAGTTCTATTTGTACCAAAAAGAGAAGTTTCTGAGATCCGGGTGTTTGATAAAGCCAGGATAATGTGGACTTTTCCTTAGCAAACAAAAATCCAGAGATGGTCTAAGCGCTCTTCCCTTAGTGGAGATGCTTTAAACAACAACAGCAACAAAAAAACCCCTGAGTTATTATTCACATAGTATAAAATACACAGATTTTAAGTGTACAATTTTGATGAGTTTATTTATTTATTTATTTTTTTGAGTTAGAGTCTCACCGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCTTCCCAGGTTCACGCCATTCTCCTGGCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACAGTGCCCGGCTAATTTTTTGTATTTTTACTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGAACCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCCAGTTTTGGTGAGTTTTGACCAGTGTATATACCTATGTAAGAACCACCCTAATCAAGATATAGAACCCTTACATTGTTACCCCAGAAAGTTGACTTATGCCCATTTTCAATTACTCCCCCTTCCCAAAGGCAATTACTGTTCTGATTTCTGGCACCATAGTTTATTTTTGCCTATTCTAGAACTTTGTATAAAAGGAAGTGTACTTTGAACTCTGTGTTTAGCTTATTTTATTCAATACCAATTTAAGATTTATCCATGTTGTTTTATCAGTAGTTTTTTGTTTTGTTTTGTTTTTTGGTGAGTAATATTCCATTAATATCACAATTTGTTTATCAGTTTTCCTATTGATGTACATTTAGATTATTTCCAGTTTTTAGCTATTGTGAATATTCCTGCTATGAACATTTTTAAACAACTCTGTGCATACTACATATGTTTTCATTTTTCTTGTATAAGTACCTAGGAGTGGAATTGCTTGGGTCAAGTATATGAAACTTTATAAGAAACTGCCATACAGTTTTCCAGAATAGTTGTAACATTTTACACTCTTGTAATATATAGGAGAATGCCAGTTGTCTGTATCCCTGCTATCATTTGGTATTATCAGTCTTTTATTTCAGTCATTCTATTGAGTATGAAGTAGTATCTCATTGTGGTTGTAATTTGCGTTTCTCTTATTACTGATGAGACTGATTGTCTTTTTGTGTATTTATTGAGCATTCTTTTGTGAATATCTGTTCAAATCTTTTACCCCCTTCATTATGGGATTGTCTTTTTAATTATTGATTTTATAGGAGTTCTTCATATATTCTGGAAACAAGTCCTTTTCAGATGTATTGGAAATATTGTATTCCAGGTCTTGGCTTATCTTTTCACTTTTTAAACTGTGTCTTTTGAGGAATAGAAGTTTTAAATTTTGATGAAATCCAGTTTTAATTTCTTTCTTTTGTGGTAGAACCTTTAATTTTCTAAGAAATCTTTGGGCCGACTGTGGTGGCTCACACCTGTTATCCCAGGACTTTCTGGGAGGCCAAGGCAGGCAGCTCACTTAAGCTTAGGAGTTCCAAGACCAGCTGGGGCAACATGGCGAAATCCCGTCTCTACTATGAATACAAAAATTAGCCATCCACCGTGGCGTATGCCTGTAGTCCCAGCTACTTGCGGCGGGTTGGGCGTGGTGGGGGGGTGGGGGGTGGTGGTAGCGGTTGGCTAAGGCAGGAGAATCGCTTGAGTCTGGGAGGCAGAGGTTGCAGTAAGCCAAGATTGTGCCATTGGACTCCAGAGTGAAACCCTGTCTCAAAAAAAAAAGGAAGAAAGGAAGGAAGGGAGGGAGGGAGGGAGGGGAGGGAGGGGAGGGAGGAGAGGGATAGGAGGGAACGGAAAGAAAGGAATCCTACCCTAAGATACTAAGATATCTTAACATTCTCTTACGTTTTTTTCCAAAAGCTTTATAATTTTATCTTTCATATTTAAGTGTGTAATCCTTCTCAAGTTAATTTTTGGATTTGATGTGAGGAAGAGAGTCAAAGTTTCTTTTTCTCTAGTATGGATATTCAATTGTTCCAGCACCATTTTATTAAAAAGACTTAAATTACCTTGGTGCCTTTATCAATGATTAAGTGATCAATTATGTGTAGATCTATTTCTAGACTCATTTTCCATTAATCTATTCATCTATCTGTAATGTCAGTACCATATTGTCTTTATTACTATGGCTTTTTAGTGAGTTTTGAAATCAAGACATAATTCCTCCAACTTTGTTTCTTTTTTTCAAAGATGATTTTGGCTATTCTAGGTTTTTTGCATTTCCGTGTAACTTTTAGAATCAGTTTGTTAGTTTCAACAACAACAACAACAAAAAGCCTGGTAGGATTTTCATTAGAATGGTATTGAATCTGTAGGTTAGTCAGTCTGGGGAGAATTCACATCTTAACAGTGTTGCCTTTTCTAATTCATGAACATGATATATTTTTCTATTTATTTAAATCTTTGAATATTTCTCTCATTAGTATTTCATTGTAGAGGTCTTATACATTTTAAAATTTATTCCCAAATGTTTTATGGTTTTTGATGCTAAAATTTTTTTTTTTCAGTTTCCTTTTCCATTTGTTCTTCCCAAAAGACCCGTCAGACAGTTCTTGGTGTGGGACTGTTCCCATACTTTGCAGAGATCCCATCATTCCTGCCCTCCCCCCGCCACTGCCCGACTAAATAACAGTAGTGTTGTCCAGTCATTGTGACAGCAGAAACTCTGGACATTTCCAGATGTTGCCTGGTAGAGGGTGGGGAGGGACTAATGCCAACTTTGTTGATAGTCATTTTATTGAGGAAATGACTCCATTGTAGTGGAGGGCCATCCTGACCTTGAAATCTGAGTCAGCACTGAGGTTTTCTGCCACTTTAGAAATACATTATAATTCTGGGTTTCCAGATTTGGGCAGAGCATTACCACAGCCTTACATACAGCCTTACCACCATTTTTTGTTTTCTTTTGTTTTGTTCTAATTAAAAAAAAAATAGAGGTGGGGGGGTCTCACTCTGTTGACCAGGCTGATCTTGAACTCCTGGCCTCAAGTGATCCTCCCATCTTGGCCTCCCAAAGTGCTGGGATTGCAGACATGAGCCATTGTGCCCAGCCCTTACCACCTTTTGAAAACCTCTATTATTTAGCAGTATTTCAAAGGAGATGAAAAAAAAAATATATATATATATTTATAGATAACATTGTGTGGGATAGTGGTAAGAAAGGGTCCTGGTGACAAGGAAACCTTATATGGGGACATCATTTTTTAATGAAACTACTACTTCAAAGTCAAAATGAAAGAATCATAAAATTGTGAGTTTGTGAGGCATTATTTTTATTTTTACACATAGGACATTTTTTATCCCTTCCAAAAAGTTGGGTGCTATAGCCTTTGCTTTCTAAATGGCTTTTTGGTATTAATTCTTAGTCCTGTATGCCCTGGAAATTTTTTATATTACTACATTATTTGGCATATGGGAGGTGATCATTAAATATTTTGATAAATGGTAAGTGGCTGTTGACTATTATTTTTACTATCTTTCCTTTTGGTTCTAATTAGTTGCTTCAAATGATTTGTATTAGTAAGATAGCATTGTGTGTGTTATAGTCACTGTGTTAAAATAGTTTCGTATCTGAGAATTAACATTTGACCATTATTTTGAAG
Seq C2 exon
GCACAACAGCAACGCCATGAAAGAGACTTGGCCCTCTTGAAACTAAAGGCTGAACAAGAGGCTCTGGAGAGTCAGAGACAATTAGAAGAAACCCGAAACAAAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837:ENST00000367607:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development