GgaINT0038287 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6334426-6334881:-
Coord C1 exon
chr8:6334718-6334881
Coord A exon
chr8:6334537-6334717
Coord C2 exon
chr8:6334426-6334536
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
CATGTTTTTCTGATCTATAGGCC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GATGTATGCGCTTCTCCCCTGCTGGTCTTCAGCATCGTTTGTCAGCAGAATTGAACTACCTTACTGCCATTGAAGAGTCTGTACGACAGCTTTCAGATGTGGAACGAGTACGAGGCATATCACTGGCCCAGCAGGAGAGCGTTTCTTTGGCTCAGATTCTAAAG
Seq A exon
GTAGTGGGAAAAATATTTCCTTGTATTAGTACTTCTGATTTGATTAATTTTCTTGTAAGATTAAAAAAAAAATAGGATGAAGTATGCTTTTGTCTTTCAAAAGTAGTTCCAGCAAGTGGCTAAGGCAAATAAGCTCCTGCATTTACCTTCTGTGCTTGAAACATGTTTTTCTGATCTATAG
Seq C2 exon
GCCCAACAGCAGCGTCATGAACGGGACATAGCTCTTTTGAAAATCAAGGCTGAAAACGAAGCTTTAAAAAATCAAAGACAACTGGAAGAGACAAGGCAGAAGGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCCCTGCTGGTCTTCAG
R:
GCCTTCTGCCTTGTCTCTTCC
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]