DreINT0047009 @ danRer10
Intron Retention
Gene
ENSDARG00000013351 | cirbpb
Description
cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841]
Coordinates
chr22:18518215-18519530:-
Coord C1 exon
chr22:18519472-18519530
Coord A exon
chr22:18519390-18519471
Coord C2 exon
chr22:18518215-18519389
Length
82 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
CTGTCCATTTTTGCCTTTAGAAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
GAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACG
Seq A exon
GTACGTATTGATTTATAATTATTAAACCTTATTAGTCAACTGCACCAACCTGCACTATAAATCTGTCCATTTTTGCCTTTAG
Seq C2 exon
AATAATGTCAAGATGAAAGCCAAACTGCCATATTTGAACTTTTGAGATCAGTCTACTTGGTTGCCCTTACCTTGGAGTTGCTGACCACAATCCAAAAAGTCATTTTTCAGTTTTAACCACTAAAGTCGGTTTTGTGCACTTGATCAATAGTCAATAAGTCCTTGTACGAAAAAGAATCATGTCTTGGTATCAGTTCTGTTTGGAAAGGATGTTCTCAATGCTCCAGTGCCTTTACACTCTTGCCTACTTCTTGTCCTCAGCTTCACACGAGTAAAAAAACCCCGATTGCAAGATCATCCCTACGCTGGCTGTATTTAAAAAGATGCGCTCTTCGAAGACCTTTTTTATTTTTTACTTTTTTGCTTTACGTTGTGTTCCAGTTGAAATGTTCTATTAAAGACAGTCCCCTTTTTTTACCCGTCAAGTATCTGCAGGATGTTCCTCGATGAGGAGCTGCATAAAATCAATGAGCATTCAGTTACTGTAAGAGTTTCAAGCCTGGTGAGGCTACCTGTATCTGATATTTTACCTTGGGAATTGTTATAGATGCTCACAGGGGTTTGAAATTCTTGTTTCTTTTTTTTAGTATGTGTTTAAGAAACTGTGTCTCTGAAACCATGCGTGAAAACTGACCTGTCCAACACAGCCTGATAGCTTCTAAGACCAATTTCCTCAAAGATCTTTGGACCAATTTCTCACTGGCTCACTGAAAGTGCTAGGGGCCTTTTGCATTTAAAATGAATTTTAAAAGCGGCAGCTTCGCCACCTGAAAAATATTCTAATCCGATCCTCTAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATGGCTCTTCGCCACCTCCATGTTGTGATGCATTCCTTTAGTGAAGCAAGGCAGGCATGTTGCATTGGAGTTGTCTCCGGCAAACCTCCTTGATGTTGCTAAAGATTTGTAAATACTCATTCAAAGAGTAAACCACTTGGGTTGGGTCATTAAACCTCATGTTAGGACTGATGACCCAAGGTACTTTACTCTTTGCACAGTCTAAATTTATTTTTAAACTATGCTCTGCTGTGGACTGAACGTATCCTCTTAAATGTCAATTTTGTGCTGTTCTGTATCAAAACCTCAGAATCCTTTTCTTTTTGTATTAAATTGGCTTCATGAAGCCCATTAAAAAGTGGTTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013351:ENSDART00000105404:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGCTCTGGAGGATCCTAC
R:
TGCACAAAACCGACTTTAGTGGT
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]