RnoINT0036592 @ rn6
Intron Retention
Gene
ENSRNOG00000015999 | Cirbp
Description
cold inducible RNA binding protein [Source:RGD Symbol;Acc:620756]
Coordinates
chr7:12401207-12402218:-
Coord C1 exon
chr7:12402148-12402218
Coord A exon
chr7:12401947-12402147
Coord C2 exon
chr7:12401207-12401946
Length
201 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TGTCCCGCTTCTGTCCTCAGCTA
3' ss Score
9.99
Exon sequences
Seq C1 exon
CCGGAGTCAGGGTGGCAGCTATGGCTATCGGAGCTCCGGTGGGTCCTACAGAGACAGCTACGACAGCTATG
Seq A exon
GTAAGTCTGGCTCCAAGGGCGCCACCTGAGTGGCTGTGGTTGGGCTCGGTGAACCCTTGTGTCCTCAGAGCATCTCAGGGCACAGCTACCAGGCCTGCCGCACAGGACAGGGCGCCAGGTGCATGAAACCCTGTGCCGTCTCCCACGCGCGGGTGGAGCACAAGCTCCAGTGACTTTATACTGTCCCGCTTCTGTCCTCAG
Seq C2 exon
CTACACACAACGAGTAAAAGCCCTCTGCGTCCAGATCGTCCTTCCATGGCTGTAATAAGATGGGGGAGCTTCGCTGAACGTTGTGTAGTGAGCACCTTGTTACCACTTTTGTAGTCCTTTCGGTTCTGACCCATCAGCAGCCTGCTTCTGACCGAGATGGCCTCGTGACTAGACCTGTTTTTAAGGAAGCGCTGTCTGTTTTTAAGCATTCTTAAAAATGTTTTGGAAAGCACTTCAGATTTTACTGTTTACCATGAGCCATGGGTATTTGTGGGGGTTTTTTTGTTATTTTTTTGTTTTTGTTTTTTTCCCTAAATTGTCGGGTTGTGTGGGTTTTCGTTACTCGTTTTTGTTTTTTGAGGTTTTTTGGTTTTCTTTTTTTCTTTTTTTTCTTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTGGTGTGGTTGCCCATGAAGTCTGGGGCCCCACCCCTCCTGAGATGGAATGGACTCGATTTGAGCAAGCCATAGCCCTCCAGCTCCCCAGCCCTGTTGCGGAGTGCAGCAGGTCCTGCCCATCGGGCACATGTCTCAAGCCCGCAGGGAGCACAGCAGTCCGGGAGGCTGTGGAAATGTTTATTTATATTGTCCTTTTTTACCGAAGACATGCATACTCCATCGATGTTGTATTCACAGTGGCTGAGGAATTCTTGTACGCAGTTTCTTTGGCTTCACGAAGCCGATTAAAAGACCGTGTGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015999:ENSRNOT00000021648:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTCCTACAGAGACAGCT
R:
CCCACAAATACCCATGGCTCA
Band lengths:
308-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]