HsaINT0035487 @ hg38
Intron Retention
Gene
ENSG00000099622 | CIRBP
Description
cold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]
Coordinates
chr19:1271981-1273172:+
Coord C1 exon
chr19:1271981-1272051
Coord A exon
chr19:1272052-1272426
Coord C2 exon
chr19:1272427-1273172
Length
375 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TGCCTGCTTCTTGTCCTCAGCTA
3' ss Score
8.62
Exon sequences
Seq C1 exon
CCGGAGTCAGAGTGGTGGCTACAGTGACCGGAGCTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACG
Seq A exon
GTAAGTCACACTCCGAGGGCGCCACGCTGCTGTGGCCTGCGGTGGGAGCTCGGTTCACCTTGGTGCCCTCTCCAAGCACTTTAGGCTGGACACTCAGACCTTGTCACTGTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCATTTCTATCGCAGGACGCAAAAGCCAAATGAGACTGACCAAAAAGGCAAGGGAGAGCGAGGGCCCGCTGGGCAGTCAGCTAGGTGCATGTGTGGCCGCAGGCCAGCCTCCCTCGGCTGTGGGGGGTGGTTGCTCCCCGGCCGCAGGCCGCGCCCTGGTCTGGCCTCTGGGGTGAAGCTGCCTCTTGTTGCTTCGGTGCCTTTACACTGTGCCTGCTTCTTGTCCTCAG
Seq C2 exon
CTACACACAACGAGTAAAAACCCTTCCTGCTCAAGATCGTCCTTCCAATGGCTGTGTGTTTAAAGATTGTGGGAGCTTCGCTGAACGTTAATGTGTAGTAAATGCACCTCCTTGTATTCCCACTTTCGTAGTCATTTCGGTTCTGATCTTGTCAAACCCAGCCTGACCGCTTCTGACGCCGGGATGGCCTCGTTACTAGACTTTTCTTTTTAAGGAAGTGCTGTTTTTTTTTGAGGGTTTTCAAAACATTTTGAAAAGCATTTACTTTTTTGACCACGAGCCATGAGTTTTCAAAAAAATCGGGGGTTGTGTGGGTTTTTGGTTTTTGTTTTAGTTTTTGGTTGCGTTGCCTTTTTTTTTTTAGTGGGGTTGGCCCCATGAAGTGGGTGCCCCACTCACTTCTCTGAGATCGAACGGACTGTGAATCCGCTCTTTGTCGGAAGCTGAGCAAGCTGTGGCTTTTTTCCAACTCCGTGTGACGTTTCTGAGTGTAGTGTGGTAGGACCCCGGCGGGTGTGGCAGCAACTGCCCTGGAGCCCCAGCCCCTGCGTCCATCTGTGCTGTGCGCCCCACAGTAGACGTGCAGACGTCCCTGAGAGGTTCTTGAAGATGTTTATTTATATTGTCCTTTTTTACTGGAAGACGTACGCATACTCCATCGATGTTGTATTTGCAGTGGCTGAGGAATTCTTGTACGCAGTTTTCTTTGGCTTTACGAAGCCGATTAAAAGACCGTGTGAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099622:ENST00000320936:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.499
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGTCCTACAGAGACAGTT
R:
CCCACACAACCCCCGATTTTT
Band lengths:
348-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development