HsaEX1008823 @ hg38
Exon Skipping
Gene
ENSG00000099622 | CIRBP
Description
cold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]
Coordinates
chr19:1271981-1274595:+
Coord C1 exon
chr19:1271981-1272051
Coord A exon
chr19:1273494-1273715
Coord C2 exon
chr19:1274307-1274595
Length
222 bp
Sequences
Splice sites
3' ss Seq
CCTGGACTGCCTCAGTCTAGAAG
3' ss Score
-0.14
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CCGGAGTCAGAGTGGTGGCTACAGTGACCGGAGCTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACG
Seq A exon
AAGCAGGCCAGAGAGCAGAGGCACGTGGCATCCCAGGGCGACCTCAGACGGCCAGCCGGTTAGCTAGTTCTGCTGTTGCTTCACGAGTTCTGAGCATTCTCTGCTAGCCTATGGAAGCTGCAGCCCTCGGAGGACAGAAGTGTTGTGCGCCCAACAGAACCCTCTGAGACGCAAGCTGCTCCCTTGGCTAGCTCATATGTGGAAATAGCCCTGTAATTCGAG
Seq C2 exon
GTTGAAGGGGCCCGGCCAGGACTCGGGGAAGGGTGGCCTGAGAGCAGCGATGACCTCTGGGGTCACTGTCCCAGGAGGGACTTCACCTGGAACAAGAGCTGGAGGCAGCCGCTTGCCCAGGAGGCTTGTCCCCTGTAAGTGCTTTCGGGAAGAGTGGCATGTGGCGCTGAGCCCTGTCCCGGGCGGCACCTGGGCGTTTCAGTGAGTCCTGCTCTCCCGCACCTATGGCCCCATGGCGGGCGCCTTTCGGTGTGTGTTGGGTGCAGGGCAGCGCCTCCCGGGAGCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099622_MULTIEX1-8/8=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=0.621 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGTCCTACAGAGACAGTT
R:
GCACCCAACACACACCGAAAG
Band lengths:
297-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains