GgaEX1015528 @ galGal4
Exon Skipping
Gene
ENSGALG00000012225 | CIRBP
Description
cold-inducible RNA-binding protein [Source:RefSeq peptide;Acc:NP_001026518]
Coordinates
chr28:2973403-2975931:+
Coord C1 exon
chr28:2973403-2973467
Coord A exon
chr28:2973885-2975230
Coord C2 exon
chr28:2975827-2975931
Length
1346 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCTTCTTGTCCTCAGCTA
3' ss Score
8.62
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GAGTCAAGGTGGCTATGGAGACAGGTCTTCAGGAGGGTCCTACAGAGACAGCTACGACAGTTACG
Seq A exon
CTACACACAACGAGTAAAAATCCTTCCTGACTCAAGATCGTCCTTCCAATGGCTGTATTTATAAAGATTTTTGGAGCTTCGCTGAAATCGTTATTGTGTAGTACATCTACTTGTATTCTCACTTTTGTAGTATTATCAGTTCTAATCTTGTCAAACACAGCCTGACAGCTTCTGACACGAGATGGTCTGATGAGACTTTTCTTTAGGAAAGCTCTGCTTTCGAGTGTTTTTAATCTTTTTTTTTTTTGTAAAGCACTTCAGATTTCGTTTCACACTTCATGGTGAGCCAAGGTGTTGTTTTTTCTTTTCCTTTTTTTTTTTTAAAGTCGTGAATTGGGGCCCCAATTCAGTTCCTTTTGAGATAGAAAGGACCTTTAATTCAACGTTCACGAGAAGCTGAACAAGCTGTGGACTTTTTTTTAAGTGCATTACCTTCGTCTTTTGTAACATTCCTTTAGTGTAGCAAGGTAGGAATGCAGCCTGGGTACAAATTGGAAGGCAAACCACCTTGATATATCTAAAGAGAAACTTGCTTGTATGTTCAACCTGCATAACGGTATTTTTACTGTTGTAATGATGTAAATTACCCAGAAATAGACTTGCAAACTTACCATAAAAGAGGTTCTTGAAAATGTTTATTTATATTGTCCTTTTTTACTGGAAGAAATATGCATATTCCATTGATATTGTATTTGAAGTGGTAAAGGATTCTTGTATACAGTTTTCTTTGGCTTTACGAAGCCTATTAAAAGACCGTCTGAAATGAACTCTGCTCCTGACATTGACATTTCATTGCACAACACAGTCCTTGAAGACGAACAGTGTGTGTAGAAGATGCCAGAGGAGAGGAGAAGACTAGCAGTAGTGTAAGAGCAAAGCAGATTGTACCGAACAGTTGCTAGAACTTAATCTGAACCCGCTCTTGACATGTGAATTTACCAACAGTGCTTTCACATAAGAACAGTGCGACTGGTCTCTAGAGGCAAAGCACTGGCAGCACATTGTGTGCCTTTGGGTGTTGGAATGCTTGGTGACAGCTGAGGGAATGCCAGCGTTAGTGAGGGGAAGTGATGTTTCCTTATAATGCTGAAGTATCCTGCGTTGAAAAGCTGTAGTGAAGAATTAGTCCTTTGGTAACTGGAGTGGTTACTGGAGTGTTAATGGTAGGTAAATTGCCGTAATTAGCTAGCTTTGTCATTGCCTTACAAGTTCTAAGAATTCTTTGCTAGCATATGGAAACTGCAGTGTCCTTGGAGAAAAGAAGTGTTGTGCCTCCAACAGAAACCTCTGAGACGAAAGCTGCTCTCTTGGCTAGTTCATATGTGGAAATAGTCCTGTAATTCGAG
Seq C2 exon
GCTGAAGAGAAGATGGACACTGGGCTTGGAAGCTGACTGGGGGTTCTGAGGAAGGGGAGTGGTGCTACCTGGGAAGCAGAACCCAGACCTGAGTTTGCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012225_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.670 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]