MmuEX1006858 @ mm10
Exon Skipping
Gene
ENSMUSG00000045193 | Cirbp
Description
cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588]
Coordinates
chr10:80170694-80172512:+
Coord C1 exon
chr10:80170694-80170764
Coord A exon
chr10:80170982-80171069
Coord C2 exon
chr10:80172414-80172512
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGTCCCGCTTCTGTCCTCAGCTA
3' ss Score
9.99
5' ss Seq
GTAGTGAGC
5' ss Score
1.86
Exon sequences
Seq C1 exon
CCGGAGTCAGGGTGGCAGCTATGGTTATCGGAGCTCGGGAGGGTCCTACAGAGACAGCTATGACAGTTATG
Seq A exon
CTACACACAACGAGTAAAAGCCCTCCGCGTCCAGATCGTCCTTCCATGGCTGTAATTAAGATGGGGGAGCTTCGCTGATCGTTGTGTA
Seq C2 exon
GATGAAGGGGAGCCAACCTGAGCCATGGGAGGATGGCTGACTCTGGGTCCTAGAGGGTTCCACAGGATCTGGAGCCATAGACTGCACACAGTTTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045193_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000054666fB7768
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCAGGGTGGCAGCTAT
R:
CTGTGTGCAGTCTATGGCTCC
Band lengths:
160-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types