Special

MmuEX0011440 @ mm10

Exon Skipping

Gene
Description
cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588]
Coordinates
chr10:80170425-80172512:+
Coord C1 exon
chr10:80170425-80170506
Coord A exon
chr10:80170694-80170764
Coord C2 exon
chr10:80172414-80172512
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCATGTGTGTCCTTCCACAGCCG
3' ss Score
9.79
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAGGAGGAGACCGGGGCTATGGAGGTGGCCGCTTTGAGTCCCGGAGTGGGGGTTATGGAGGCTCCAGAGACTACTATGCCAG
Seq A exon
CCGGAGTCAGGGTGGCAGCTATGGTTATCGGAGCTCGGGAGGGTCCTACAGAGACAGCTATGACAGTTATG
Seq C2 exon
GATGAAGGGGAGCCAACCTGAGCCATGGGAGGATGGCTGACTCTGGGTCCTAGAGGGTTCCACAGGATCTGGAGCCATAGACTGCACACAGTTTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045193_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available
Features
Disorder rate (Iupred):
  C1=0.845 A=0.640 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGACCGGGGCTATGG
R:
TGTGCAGTCTATGGCTCCAGA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types