HsaEX6091525 @ hg38
Exon Skipping
Gene
ENSG00000099622 | CIRBP
Description
cold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]
Coordinates
chr19:1271551-1274595:+
Coord C1 exon
chr19:1271551-1271632
Coord A exon
chr19:1271981-1272051
Coord C2 exon
chr19:1274307-1274595
Length
71 bp
Sequences
Splice sites
3' ss Seq
AACGTTTGTCTGTCTTGCAGCCG
3' ss Score
9.93
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GAGGAGGGGACCGAGGCTATGGGGGGAACCGGTTCGAGTCCAGGAGTGGGGGCTACGGAGGCTCCAGAGACTACTATAGCAG
Seq A exon
CCGGAGTCAGAGTGGTGGCTACAGTGACCGGAGCTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACG
Seq C2 exon
GTTGAAGGGGCCCGGCCAGGACTCGGGGAAGGGTGGCCTGAGAGCAGCGATGACCTCTGGGGTCACTGTCCCAGGAGGGACTTCACCTGGAACAAGAGCTGGAGGCAGCCGCTTGCCCAGGAGGCTTGTCCCCTGTAAGTGCTTTCGGGAAGAGTGGCATGTGGCGCTGAGCCCTGTCCCGGGCGGCACCTGGGCGTTTCAGTGAGTCCTGCTCTCCCGCACCTATGGCCCCATGGCGGGCGCCTTTCGGTGTGTGTTGGGTGCAGGGCAGCGCCTCCCGGGAGCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099622_MULTIEX1-4/8=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=0.702 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSP00000322887, ENSP00000412831, ENSP00000465077, ENSP00000465334, ENSP00000465558, ENSP00000465779, ENSP00000466025, ENSP00000466110, ENSP00000466131, ENSP00000466207, ENSP00000466712, ENSP00000466897, ENSP00000467449, ENSP00000467734, ENSP00000467848, ENSP00000467948, ENSP00000468645, ENSP00000468788, ENSP00000486590
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGGAGGCTCCAGAGAC
R:
CCGAAAGCACTTACAGGGGAC
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains