DreEX6098721 @ danRer10
Exon Skipping
Gene
ENSDARG00000013351 | cirbpb
Description
cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841]
Coordinates
chr22:18517032-18519854:-
Coord C1 exon
chr22:18519635-18519854
Coord A exon
chr22:18519472-18519537
Coord C2 exon
chr22:18517032-18519129
Length
66 bp
Sequences
Splice sites
3' ss Seq
TATGGCAAATATTACTGTTGATT
3' ss Score
-3.68
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
GTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAG
Seq A exon
ATTTTAGGAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACG
Seq C2 exon
CTTCACACGAGTAAAAAAACCCCGATTGCAAGATCATCCCTACGCTGGCTGTATTTAAAAAGATGCGCTCTTCGAAGACCTTTTTTATTTTTTACTTTTTTGCTTTACGTTGTGTTCCAGTTGAAATGTTCTATTAAAGACAGTCCCCTTTTTTTACCCGTCAAGTATCTGCAGGATGTTCCTCGATGAGGAGCTGCATAAAATCAATGAGCATTCAGTTACTGTAAGAGTTTCAAGCCTGGTGAGGCTACCTGTATCTGATATTTTACCTTGGGAATTGTTATAGATGCTCACAGGGGTTTGAAATTCTTGTTTCTTTTTTTTAGTATGTGTTTAAGAAACTGTGTCTCTGAAACCATGCGTGAAAACTGACCTGTCCAACACAGCCTGATAGCTTCTAAGACCAATTTCCTCAAAGATCTTTGGACCAATTTCTCACTGGCTCACTGAAAGTGCTAGGGGCCTTTTGCATTTAAAATGAATTTTAAAAGCGGCAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013351-'19-22,'19-14,20-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAGGCTATGGTGGTGGGG
R:
AGCCAGCGTAGGGATGATCTT
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]