GgaEX1015526 @ galGal4
Exon Skipping
Gene
ENSGALG00000012225 | CIRBP
Description
cold-inducible RNA-binding protein [Source:RefSeq peptide;Acc:NP_001026518]
Coordinates
chr28:2973194-2975230:+
Coord C1 exon
chr28:2973194-2973278
Coord A exon
chr28:2973403-2973467
Coord C2 exon
chr28:2973885-2975230
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATGAATGTTTCCAACAGCAGGAG
3' ss Score
3.56
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GAGGTGGAGACAGAGGCTACGGCGGGAGCAGATTTGACTCCAGAAGCGGAGGATATAATGGCTCCAGAGACTACTATAATAGCAG
Seq A exon
GAGTCAAGGTGGCTATGGAGACAGGTCTTCAGGAGGGTCCTACAGAGACAGCTACGACAGTTACG
Seq C2 exon
CTACACACAACGAGTAAAAATCCTTCCTGACTCAAGATCGTCCTTCCAATGGCTGTATTTATAAAGATTTTTGGAGCTTCGCTGAAATCGTTATTGTGTAGTACATCTACTTGTATTCTCACTTTTGTAGTATTATCAGTTCTAATCTTGTCAAACACAGCCTGACAGCTTCTGACACGAGATGGTCTGATGAGACTTTTCTTTAGGAAAGCTCTGCTTTCGAGTGTTTTTAATCTTTTTTTTTTTTGTAAAGCACTTCAGATTTCGTTTCACACTTCATGGTGAGCCAAGGTGTTGTTTTTTCTTTTCCTTTTTTTTTTTTAAAGTCGTGAATTGGGGCCCCAATTCAGTTCCTTTTGAGATAGAAAGGACCTTTAATTCAACGTTCACGAGAAGCTGAACAAGCTGTGGACTTTTTTTTAAGTGCATTACCTTCGTCTTTTGTAACATTCCTTTAGTGTAGCAAGGTAGGAATGCAGCCTGGGTACAAATTGGAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012225-'6-11,'6-8,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.670 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAGACAGAGGCTACG
R:
ACACAATAACGATTTCAGCGAAG
Band lengths:
183-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]