MmuEX0011440 @ mm9
Exon Skipping
Gene
ENSMUSG00000045193 | Cirbp
Description
cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588]
Coordinates
chr10:79633170-79634400:+
Coord C1 exon
chr10:79633170-79633251
Coord A exon
chr10:79633439-79633509
Coord C2 exon
chr10:79633727-79634400
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCATGTGTGTCCTTCCACAGCCG
3' ss Score
9.79
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAGGAGGAGACCGGGGCTATGGAGGTGGCCGCTTTGAGTCCCGGAGTGGGGGTTATGGAGGCTCCAGAGACTACTATGCCAG
Seq A exon
CCGGAGTCAGGGTGGCAGCTATGGTTATCGGAGCTCGGGAGGGTCCTACAGAGACAGCTATGACAGTTATG
Seq C2 exon
CTACACACAACGAGTAAAAGCCCTCCGCGTCCAGATCGTCCTTCCATGGCTGTAATTAAGATGGGGGAGCTTCGCTGATCGTTGTGTAGTGAGCACCTTGTTCCCACTTTTGTAGTCCTTTCCGTTCTGACCCGTCAGCAGCCTGCTTCTGACCCAAGATGGCCTCGTGACTAGACCTGTTTTTAAGGAAGCGCTGTCTGTTTTTAAGTATTCTTAAAAACGTTTTGGAAAGCACTTCAGATTTTACTGTTTACCATGAGCCATGGGTTTTTGTTTTTTCTAAATTGTCGGGTTGTGTGGGTTTTGGTTACTCGTTTTTGTTTTTTCAGGTTTTTTGGTTGTGGCTTTTCTTTTTTTTTCTTTTTTTGTGTGGTCGCCCCTGAAGTCTGGCGCCCCACCCCTCCTGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGCCCGGCTGCGGAGTTGCAGCAGGTCCTGCCCATCGGGCACATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045193-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.620 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGAGGTGGCCGCTTTG
R:
AAGTGGGAACAAGGTGCTCAC
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: