RnoEX0021360 @ rn6
Exon Skipping
Gene
ENSRNOG00000015999 | Cirbp
Description
cold inducible RNA binding protein [Source:RGD Symbol;Acc:620756]
Coordinates
chr7:12401207-12402485:-
Coord C1 exon
chr7:12402404-12402485
Coord A exon
chr7:12402148-12402218
Coord C2 exon
chr7:12401207-12401946
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTGTCCTTCCACAGCCG
3' ss Score
10.67
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAGGAGGAGACCGGGGCTATGGAGGTGGCCGCTTTGAGTCCCGGAGTGGTGGTTATGGAGGCTCCAGAGACTACTATGCCAG
Seq A exon
CCGGAGTCAGGGTGGCAGCTATGGCTATCGGAGCTCCGGTGGGTCCTACAGAGACAGCTACGACAGCTATG
Seq C2 exon
CTACACACAACGAGTAAAAGCCCTCTGCGTCCAGATCGTCCTTCCATGGCTGTAATAAGATGGGGGAGCTTCGCTGAACGTTGTGTAGTGAGCACCTTGTTACCACTTTTGTAGTCCTTTCGGTTCTGACCCATCAGCAGCCTGCTTCTGACCGAGATGGCCTCGTGACTAGACCTGTTTTTAAGGAAGCGCTGTCTGTTTTTAAGCATTCTTAAAAATGTTTTGGAAAGCACTTCAGATTTTACTGTTTACCATGAGCCATGGGTATTTGTGGGGGTTTTTTTGTTATTTTTTTGTTTTTGTTTTTTTCCCTAAATTGTCGGGTTGTGTGGGTTTTCGTTACTCGTTTTTGTTTTTTGAGGTTTTTTGGTTTTCTTTTTTTCTTTTTTTTCTTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTGGTGTGGTTGCCCATGAAGTCTGGGGCCCCACCCCTCCTGAGATGGAATGGACTCGATTTGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015999-'6-14,'6-12,7-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.680 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCAGAGACTACTATGCCA
R:
ATCTCGGTCAGAAGCAGGCT
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]