GgaEX6047200 @ galGal3
Exon Skipping
Gene
ENSGALG00000012225 | CIRBP
Description
NA
Coordinates
chrUn_random:969877-970817:-
Coord C1 exon
chrUn_random:970733-970817
Coord A exon
chrUn_random:970544-970611
Coord C2 exon
chrUn_random:969877-970126
Length
68 bp
Sequences
Splice sites
3' ss Seq
CGCATGAATGTTTCCAACAGCAG
3' ss Score
4.58
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GAGGTGGAGACAGAGGCTACGGCGGGAGCAGATTTGACTCCAGAAGCGGAGGATATAATGGCTCCAGAGACTACTATAATAGCAG
Seq A exon
CAGGAGTCAAGGTGGCTATGGAGACAGGTCTTCAGGAGGGTCCTACAGAGACAGCTACGACAGTTACG
Seq C2 exon
CTACACACAACGAGTAAAAATCCTTCCTGACTCAAGATCGTCCTTCCAATGGCTGTATTTATAAAGATTTTTGGAGCTTCGCTGAAATCGTTATTGTGTAGTACATCTACTTGTATTCTCACTTTTGTAGTATTATCAGTTCTAATCTTGTCAAACACAGCCTGACAGCTTCTGACACGAGATGGTCTGATGAGACTTTTCTTTAGGAAAGCTCTGCTTTCGAGTGTTTTTAATCTTTTTTTTTTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012225-'5-10,'5-7,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=0.979 C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAGACAGAGGCTACG
R:
ACACAATAACGATTTCAGCGAAG
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]