BtaEX6040303 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007480 | CIRBP
Description
Bos taurus cold inducible RNA binding protein (CIRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001034278]
Coordinates
chr7:45356264-45359172:+
Coord C1 exon
chr7:45356264-45356345
Coord A exon
chr7:45356430-45358869
Coord C2 exon
chr7:45359027-45359172
Length
2440 bp
Sequences
Splice sites
3' ss Seq
CATCTATGTCCTTTGTGCAGCCG
3' ss Score
7.78
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGGTGGGGACCGTGGCTATGGGGGCAGCAGGTTCGAGTCCAGGAGCGGGGGCTATGGAGGCTCCAGAGACTACTACAGCAG
Seq A exon
CCGGAGTCAGGGTGGCGGGTACGACCGGAGCTCTGGCGGGTCCTACAGAGATAGCTACGACAGTTATGGTAAGTGGCGCTCCAAGGGCTGGTGGTGGGAGTTCAGTGCGCCTCAGTGCACTCTGCCAGCCTCGATCAGAGCTGGTTACTCTGCTGACCCTGTAAGGGACAAGATTGTCCTCTCATGTCTCGGTGCCAGCAGCCACTTCTGACCAAGGAGAAAAGGGAGATCCAGGGCTTCCGAGCAGAGTGGGCAGGCAGCGTCCGTGCGTGTGGGCCACGGCCACCCTCGGCTATGGGGGGGTTGGTTGCTCCTGAGGCTGCAGGGCTGGGCCCCGAGGGCCGGGCCAGGCGTGGACTGCTGCCTCTTGCCGTCTGCTTCTGCGCCTTTACACTGTGCCTGCTTCTTGTTCTCAGCTACACACAACGAGTAAAAATCCTTCCTGATCGAGATCGTCCTTCCAATGGCTGTGTGTTTAAGGACTTGGGGAGCGCCGCTGCATCGTTAGTGTGTAGTGACCACGCCTCCTTGTGCCCACTTCTGTAGTCTTGTTGGTTCTGATCTTGTCAAACACAGCCTGACTGCTTCTGACCCCCAAATGGCCTCACTGCTGCCCTTTGCTTTTTAAGGAAGTGCTTTCTGTTTTTAAGGGTTTTTAAATCGTTTGGAAACGCACTTCTGGTTTTACTTTTAACCTTTTTACCACTAGCCAAGAGATTTCTTAGAAAATAACTGGGGGTTATTTTGTTTTTGGTTGTGTTGCTATTTTCGTTTCTTTTCAGCGGGGTCAACCCCGTGAGGTTGCTCTTTTTTGAGGTTGAACGAACTCTGGATCCGCTCTCTTTGTCGGAAGCTGAGCAAGCTGTGGCTTTTTTCCAACTTGGTGTAACATTTCTGAGTGTAGCGTGGTCAGACTGTGCAGGAGGCAGTGGAGGTGCCCGGGCTGCCCGCCTGTCCTGGGCGACCCACAGTCCCCAAGAGGTTCTTGACAATGTGTGTTTATATTGTCCTTTTTTACTGGAAGTCATACACATATGCCATCACTGTTGTATTTGAAGTGGTTGAGGAATCCTTGTATGCCGTTTTCTTTGGCTTCACGAAGCTGATTAAAAGACTGTCTGAATGAACCTCGCTCTGAGCATCTCCCTTTGATCGCACCACACGCGTCCTGCTGCCAGCTTGAGGCAGGCAGAGTAGAGCAGAGCTGGCAGCTAGAGGACTAGGGCTGCCATCCTGCCTGCAGCTCCCAGGGCTAGAGGAGGAAGGTAGAGCCAGTGATGCTGGCTGGGCCCCTGTGACCACTGACTGCCCCCACCCAGTTAGGCGAGCAGGTGGGTGATGGGAGTGGGCTCTCGGACTGCAGGACAGCCCCGGGATTCTTCTGGCCGTGGCAGCTGGAGGGCTCGATGGGCGGGCAGCCTAGCAGGGACAGTGGACATGGGGGCGCCCAACGCTGACCCTGAGCCCCTTAATCTAGAATCAGGCCAGAGAGCGAGCGGATGCAGACAGTGTCCCTGGGTGACCACAGACTGACTGGCTCATTAGCTAGCTCTGCTGTTGCTTTACAAGTTCTGAGCATTCTCTGCTAGCCTATGGAAGCTGCAGCCCCTCGGAGGACAGAAGTGTTGTGCGCCCAACAGAACCCTCTGAGACGCAAGCCGCTCCCTGGGCTAGCTCATATGTGGAGATAGTCCTGTCACCGAGGTAACTCCTTTTGCTCGTCCGCATTCCTCTTCTCTCGGGCGCTCATATGGAAGCCATATTACCCGGGGAATGTTCCTTTGACTTTTTTGTTTTTCTATTTTTTTTCCTTTTTTTTTTTTTTAAATAAAAACAAGGTGGAACCAAAGGCAGGCCCCGGCCATTTGCCCTTCCCCACCTGCAGCCAGGTGAGCAGCCTGGGCAGTTGAGTTTCACCAGTAGGTTCCACCCGCTAGTAGGATTGGAGACCACCAAACGCCCTGCCTTTTGGAATTTTTTGTTCATCAATTGACTGTCTTTTCCAGACCTCTTTAAGTCACACTCCTAACTAGTTCTCTATGGTGTCTGCTGCTGCCATGACATTTTTCCCAGAGCTTGTGCCGTTTTCTAAGCAGCTCCGTCCCAAATAGGTGGCTGGCTCTGCTTAAGAGTGGAAGGTAGCCTGGCCCACCTGAAAGGCTCAGGCCTGCCCATGGTGGGGCCTCAGGTTGGCCCCGATGACTAGCTTGAGACCCTCCCAGGAGCTGTGGATTGTTCTGGGGGGAGGCAGGGAGGGGAGCTCAGCTCTGCCAGGGGTAAGGGCTAACATTCGTTTGCTTTGGCAGGTTGAATGGAAGTCAGTGTGACCCGGAGGAAGTGTGGCCTGAGAACAGTGTTGACCTGGGGTCCCTGTCCCAGGAGGGACTCTACCCAGGATCGAGCCAGAGGCACGGATGCCTGCCCTCGCAGCCCGTCGCCT
Seq C2 exon
ATGTTTTACTGGCAAGGTTGGGGCACGGGGTTCAAGGTGCTCCAGGAGGACAGGCCTGTGGTGCTGGCATGGCGGTGTGTCCTCACCGGCGATGTGACAAGAAAGCGTGGAAGTCACGTTTGAATAAAGGGATGGTGTGTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007480-'11-11,'11-6,12-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.100 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]