MmuEX6049776 @ mm10
Exon Skipping
Gene
ENSMUSG00000045193 | Cirbp
Description
cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588]
Coordinates
chr10:80170694-80172786:+
Coord C1 exon
chr10:80170694-80170764
Coord A exon
chr10:80172414-80172512
Coord C2 exon
chr10:80172637-80172786
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACGCGCCTTTGTTTGGCAGGAT
3' ss Score
7.92
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCGGAGTCAGGGTGGCAGCTATGGTTATCGGAGCTCGGGAGGGTCCTACAGAGACAGCTATGACAGTTATG
Seq A exon
GATGAAGGGGAGCCAACCTGAGCCATGGGAGGATGGCTGACTCTGGGTCCTAGAGGGTTCCACAGGATCTGGAGCCATAGACTGCACACAGTTTGCCCG
Seq C2 exon
GCAATTCCTGAGCTAGCACCTGGCTCGTGGGCGATGCAGGCTTCTGTGGAAAAGATAAAGAAGCTGGGCTGGCGTGGTCGCTGGGACAGAATGTTGTGGGGGCGGGGGGGGGGGGGTTGGGTTGCCTGAATAAAGGGCTGTGACCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045193-'15-26,'15-25,21-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGTCCTACAGAGACAGC
R:
GCCCTTTATTCAGGCAACCCA
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types