DreINT0047544 @ danRer10
Intron Retention
Gene
ENSDARG00000075993 | clic5a
Description
chloride intracellular channel 5a [Source:ZFIN;Acc:ZDB-GENE-041114-84]
Coordinates
chr17:5412008-5414595:-
Coord C1 exon
chr17:5414489-5414595
Coord A exon
chr17:5412190-5414488
Coord C2 exon
chr17:5412008-5412189
Length
2299 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTCGTTTGAAATGTTTGCAGGTC
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTATCCTAAACTGGCGGCAAAGAACAAGGAGTCAAACACAGCGGGAAATGACATCTTCGCAAAGTTCTCCGCTTACATCAAGAACACGAAGCCAGAAGCCAACGCAA
Seq A exon
GTGAGTTTGAAGGAACACCCCTCTTGTATTTTGTAAATAGGCTCATTTTACAACTCCTCTAGAGGTAAACGGTTCGGTTTTACCATTTTTAAATTCACTCAAATGATCTCCGGGTCTGGCAAGAGCACTGTTAGCTTAGCTTAGCATAGATCATTGAGTCTGATTAGACCATTAGCATCTCGCTTAAAAATTTCAAAAAGGATTATCGATCATTTTCCTTGATAATTTGAGCTTTTTTTAGTTACATTGTGTACTAAGATCAATGAAAAAAGAAAAGTTGTTATTTTCCAGGCCGATATGGCTAGGAACTATACTTTTGTTTCTGTGTAACAATCAAGGATCTTTGTTGCCGTACCATAGCTACAGCTGGCGCAATGATATTACGCAGCACTGTTACCTACACTTTAAAACATTATATGATCAACTAGTCATGAAAGCATATGTTTTTAGTTACTCATTCATTCATTTTCTTTTTGGCTTAATCCCTTTATTAATCTGCGATCACCACAGCGAAATGAGCTGCCAACTTATCCAGCATATGTTTTACGCAGCGGAAACACCCATCCATACACACTCATTCACACACACTATGGACAATTTAGCTTACCCAATTCACCTATACCCCATGTTTTTGGACTTGTGGGGGGGGCGGGGGGGGGGGGGGGGGGAAGGAGAAGTTAAAGGAACATACAGTGTCATATTTTCATTTTCCATCTTAGTAACTACAGAAGAGCTTTAAAACGGGAAGTTACCTTAACGCTTTGGTCAGTTTTGAGCAAGATGCTAATGGTCTAATCGGATTCAATGCACTATGCTAAGCTAAGCTAAAATTGCTCCTGCCAGACCAGTTTTCCATATTTTGTCATTCATGTTTTTATTTTTTTCGCTTTATTTCTGCTTTTGAATTGCATTATGGGACTTTGATCTTTCTTCCAACAACTTTCAACTTTAAAAAGTTTAAAAAAGTGACTTTTATTGACATTTTTAATAGTTTAAAGTGATATATTGTCTGGTTTGGTGTTGTATATTACTGTATATTATTGTATATACAGTTGCATAATATAACTGCCAGTACATTTTCTGTTATTTTACAGACTTTTTTCTCTATGTATTATTTATGATACATTATATTAATTTAAACTACTAATATGTAATATGAGCAAGATGCTAATGGTCTAATCTGATTCAATGCTCTATGCTAAGCTAAGCTAAAATTGCTCCTGCCAGACCAGTTTTCCATATTTTGTCATTCATGTTTTTATTTTTTTCCCTTTATTTCTGCTTTTGAATTGCATTATGAGACCTTGATCTTTCTTCCAACACCTTTCAACCTTGAAAAGTTTGAAAAAGTGACTTTTATTGACATTTTTAATAGTTTAAAGTGATATATTGTCTGTTTTGATGTTGTATATTACTGTATATTATTGTATGTACAGTTGCATAATATAACTGCCAGTACATTTTGTTATTTTACAGACTGTTTTCTCTATATATTACTTATGATACATTATATTAATTTAAACTACTAATATGTAATATGAGAAAGATGCTAATGGTCTAATCTGATTCAATGCACTATGCTAAGCTAAGCTAAAATTGCTCCTGCCAGACCAGTTTTTCATGTTTTGTCATTCATGTTTTTATTTTTTTCCCCTTTATTTCTGCTTTTGAATTGCATTATGGGATCTTGATCTTTCTTCCAACAACTTTCAACCTTGAAAAGTTTGAAAAAGTGACTTTTATTGACATTTTTAATAGTTTAAAGTGATATATTGTCTGGTTAGGTGTTGTATATTACTGTATATTATTGTATATACAGTTGCATAATATAGCTGCCAGTACATTTTCTGTTATTTTACAGACTTTTTTCTCTATGTATTATTTATGATACATTATATTAATTTAAACTACTAATATGTCAATAAAAGTCACTTTGTTAAACGGTTGAATTTTTAACATCAAAAGACGACAGAGCAGAGATCATAGTCCCAAAACCATAAATAAATGGAAAACACTTTCACAAATCACAAAATATGAAAATTGTAAATTAATAGATTTTTTTTTACAGTGTAGGAGAGTTGCAAAATCAAAAAGTAAAGTATTTCTTTATCATCTGCTCTATGACTTATTAAAGGAGTCTCTACAGCTCTTTCTCGATTCTCTGCTGTCGACTGCAAAATATAGAGCCCTAAAGCCCCTTCACATCCCACTAAGCCTTTACAGGGATTGTCTTGACTTAAAGCCGCTGTATTTCTTCAGATGAATACATTCAGTGCAAGCTCGTTTGAAATGTTTGCAG
Seq C2 exon
GTCTGGAGAAGGGGCTGCTGAAGGTTTTGAAGAAACTGGACAGCTTCCTAAACTCCCCTCTGCCGGACGAGATTGATGCTGAAAGCACCGGGGAGGAGAAAAGCTCAAACCGCAAGTACTTGGACGGCAATGAATTAACGCTTGCTGACTGCAACCTCCTCCCGAAACTGCACGTCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075993:ENSDART00000035944:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.5=100)
A:
NA
C2:
PF134101=GST_C_2=FE(42.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]