MmuINT0037306 @ mm9
Intron Retention
Gene
ENSMUSG00000037242 | Clic4
Description
chloride intracellular channel 4 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1352754]
Coordinates
chr4:134774423-134779485:-
Coord C1 exon
chr4:134779379-134779485
Coord A exon
chr4:134774605-134779378
Coord C2 exon
chr4:134774423-134774604
Length
4774 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTCTCTCTCATGTGTTTCAGCGC
3' ss Score
10.73
Exon sequences
Seq C1 exon
GTACCTAAAGCTTTCACCAAAGCACCCAGAGTCGAACACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCTTACATCAAGAACTCAAGACCAGAGGCTAATGAAG
Seq A exon
GTAAAAACAAAAACAAAACCCAACAACAATTAATTGGATTGTCCCTACAGAAAGCAAAAGGAAACAAAAACCCAGGCAACCGTCTGAACTGTTAACGAAGACAGCGAGCATCAGGGAATGTGGGAAGTTCAGGTTTCCCTCTAAGTGTCTGAGCTGTAGTCGGGAAAGCCATGAGACCCTGGAGTAAGCGGTTAAGCTATGTTCTTCTGCCTTCTGCTTCAGGGCCGGGCATCTGGTGGGCAGGTGTGTGATGGGAGGCCTTGAGTTCTCGGACACTGAGCAGTCCCCAGAAGGGAACCGCGGAGAGCTGGGTACCATCAGAGCCGTGGGTGGAGCGGCTGTGGTGGGTGCTGAAATGGATGGATTTAGCATTGAATTGATCACCAAATCTCTTGTTTATTATGGGGCGCTGGCAGCCTAAAATTAATTAGCTCCCGTCTTTTGTTGTGCCTGTGTGCTAATTACTCTTAGTGAGGAGTTTTTGGAGTGGCCTTCAGAGAATGATTAAACTCTGCAGCCTTCAGATTTCTTTACATCATAAAACTAGAGTTTTTGTTTCAGGTCACTGTTACAGCGAGGATAGTTTAGTAGTGCAGATACTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTAAAGAAAAGATACTATGAGGCCAGTCCAGACTACACAAACTTTGTATATTCAAGTATATACTCCAAACCCCAAAAGTTAGAGCAGTGGCAAAAGGAGCCAAAGATCAGCGCCCTAAAAATATCTGGAGTCTGCTATGGCTGGAGGCAGGGTGGTAGCTTGGGCTCCAAAGGCTCTGGCAGCCCATGGGCCTAGCCCGAAGGAAGGGTGGGCATCAGTGCTGTTAATAGCAGAATAGACCTAAGAATGAATCGCGCACCGACTTCCTTGTTATTTCAGTCTCCAGCTATGGCTCCTTCCTAATACCTGGTTTAAGGTTATAGTGTTTCATAATTCACTGTGGGATTTCCATGTCTTTGCTCTTGGTTTCTGGAATGTTTTTCTTCAGTGATGGAGAAAGGGACTGTTTTAGTGCCCAGGCCTGGTGTATGTCTATTTTTATAATGTGTTCTGTGGCTGCCTTGGTTTAGAAGCAATTTTCTTGAGTAATTGGCCGTTTTCCTGACTAATGTTCTGTCTAAGCAAATGTTAGGTTGGAGCCCCTGCTTCCCAGAGTGTTTGGGCCGCCTGCTTGCCCGGGCCACCTTGTTCACAAAGCCGGCTTTTATACCCAGGCCTGCTAGCTGAGCAGCCTTTGTGCTCTCCTGCTCATAATGTTTTTATTTCTGCGTGCAGTGTTTGAGGGAGTGTCTGGAGAGTTGGTCGGATTTCATTTACTACATGGAGGGGAGAAGAGGAGAGTAAAATGAATTTTCCTTTGCCTTGGGGGTGAAGGCTGGGGGAGGAAAAGTGACTCACTTAAGTATAACTTTGTATTCTATTTTTTATCTGTCAAGTTGTTACTGCTTTAAGTGGCCACTTACGCCCACTGTCTTTACAGTGCTGCACAGTAAGGAGGGGGCTCAGCAAGCACGTGACGTGTTCAGCAAGGCTTTGTGTTCAGTACCTGCTGGTAAATAAAGAGTTCTAGTTGCCAAGGTACTTTTCTCACAAGGGCCTGTCACTGCTCCAAGACTTTCGAAAACACCTTTAAATCAAATTCAAGCTGAATGCTTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGTTACAGTTCTCTTCCTGTCTGCTGAGCAGTTGCATGCTTTCAGTAAACCTAGGCAGTGAGGTGAGGCTGCGCCTCCCAACACTTGTAACCACAGTGCACACAAGTCTGCTGTACCAGCCTAGTAAGTGCTTATAAAATCCAATGTAGCTGAATATTTTAAAGACCCTCTGGGCTTAGGTGTCTAGATACAAATTAGCCACCTGAACATGGGTCAGGGCCAGTGCTTAGATTGAAGTACACCGTAAACCAATAGGCTTTAGTGAATAAACTAAAGGGAACTGTGAGAAAGAGACAGAGACAGAGACAGAGACAGAGGAGGAGGGAGAGGGAGAGGGGATAGGTGACAGAAGACGGATAGATCAATCAATCGATAGATCAATAAATGGATCGGTCTATCTTTTGGTAACAGGTACAAGTTGGCCGGGAGTAGGTTTATGTAACCTAAGCACTAAGAGAGAAGTGAACCAGGCGTGTGGTGCGCATCTTTAATCCCACCGCTACTGGGGCAAAGGGCGGCTAAGGTGATGCTGTGAGACCATATCTCAAAATTAAACTATCCACCCAGAGTTTCTCACGTACTAGCTGAGAGCTCTAACACTGAGCTATACCCTCGCTCAATTGTGTATGTATTTTAACAACAGGAATGTTGATAACACATTTAACACTTCTGCCTTGAATCTGCCCGTTCAAACATGTAAGTAACAGAGCAAGTTATGTTTATTGGAAAAGCTAAGGTTGACAGGGATAATTTTTAAAAGATAGGATCTTTTCGTTCTTTGAGACTGTCACACATGCACACAATGTACTTTGGTCCTGTTCACTCCTCTCCTCCCACCAACTCTACCAGATCCACCCCATCTCCCCACACTTCCAGCTTCAGGTTTTGTTTTTAGCAATCCACTGTTTACAATTTTCTGTTCACATCTTCCTGGGTGTGGGGCTGTGCACTGGAGCATGGGTGACCTACCAGTAGCCACACCTGCAGAGAAAACTGACTCAGCCAGGGATGGGGGTTCACAAGTCTCCCCATTCCCATGCAGAAATGCTTTGTGCAGGTGACCCCAGCTACCGTGAGTTTGTGAGTATAGGGTCCCGTTGTGTTCAGAAAATATTTCTCTGATCCTTCCTGACTTACAACAGGGGAATAGTTGAATGAATATAATTTCAGTATGTAATTCAATAACAGATCCAAGGTGACTGGGAGTCATTTTATATAAAACAGTGAGTGGTGTAGTGCACTTGCACGTTCATATTATTGTGCATTATAAATGCTTCCTGCCACTGATCCCAGCACTCTGGGGGCCGAGCAGGAAATGGCCGGGCATTCCAGACTAGGCTGGCTACAGAGTGATCTCCTGGGCACCCCCACATCCCTTCAAGTCATTCCATGTCCAAACAAGTCTGCCTCTGGCTTTATAAATTCTTATTTATATATTCTTCTTATTTAATAGGAATTCTATTTGCCATTTCCCAGTTGTTGGACCTTGTAGATGGCCTCTTTGACTATGCTATCGGGTATTGCCCTTGAGCTAGGTTACAGGTAGGTGTGGGAAGGTTTGCACCTTTCCTCGTCCTTTTGAGACGGTGTCTTACTGTTGGCTGCAGCTCTCCTGGATGCAGATTATAGCCCGTACCACCATCTCTAGCTACTTTATGCATTTTGCCAAAATTTCAAAGTCTGTACCAGTTTGTATTTCCACGAACTGCAGGTGTTCATTTCCATATTTTCTTAGGCCAAAAGTATTATTTTTAATTTTAATATAATTAATTTTCAGCTGTGTATACTATACTGCTTTTTTGTTTGTGTTTTGAATAGCTTCTTAGAGATAGAGATGGAGTGCTAAGCAGCCCTCCTAGCTTCTAGACAGATGACTTTCTGCTGCTCTGCTGCTGCCCCCCAGTGGTTGGTCTCGGTGTGCTGAACTTCACAACTTCGTTCCTTTCATTTTGGAACCTCCTAGTTAGTACCTGTGTCTTTTTTTCATTGGTCATACCTTATGATGATAAATTATTATTAATAATGATTAGCATAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGTTGTTCTTTCAGAGGACATAGATTTAATCCCTAGCACTCACATCACAGCTCACAACTCTCTGTAACTCCACTCTCAGGATGTCCAGTACACACATGGTATACAGACACATATGTAGGCAGAACAACCCATACACATGGGATAAAAATAAAAGTTTAAAACCATTTAAAAATAATGGTTAACACAAACTATAACTGATTTTCCTCTCAGTTTTCACTGGTTTTTATTCAGTCTTAGGGTTCTCTTAAGATCCCAGTACTTGGAAGGCAAAGGCAGATGGATCTCTGAGTTCGAGGCCTGCCTGGTCTACAGAGGGAGTGGAGAGAGCTCCTATTGTCCGTGTTTTTTCTATGCTGTCCCTGCTCCCTCCTAAGGCTTCCTGGCCTTGTCTTTCCAGCTGCACACAACTGGCTTAGTCCAAGTTTGAGTCATGACAGTCGTAGCATTTCAGTCCACTTGGCTCTTATGGAGGCTGCTGCCAGTCCATCCTGTAACTGACTTTGTAGTCTGAACTCGTGCCTTGGGTAAGGCAGGGCTGTTCTTGGGCGCTCGTGTTAGCAGGCAGGCTGAGAGCCCTGGCTCCCAGGCTCTCTGTTTAGGTTGTGTGCACGGGTCTTGGTGCCCTTGACACATTTCTTCGTGAGCAGGATTATGCTTTCTGTCTTGGAAGACTTTCTCCTAGCTCTGAATTAGTAGACTTGCCTTTCCCCATATATCGTTGCAGTTTACCTGTTAGTGGGATTGGGCCACGGCTTGCTGGTGAGGGCCACAAACCATGCAGACGGTTTTGTTGGTTGGCAGGATAGACCTCTCTCCTTCAGTTCTGTCCTCGCTGGAAGGAGCATGCAGGCAAGCTCCCGTTCTCCCGGGGAGTAGGAGTGAAATCGGCGCCGTTACTGGGGCACGGCCTGCCCAGACTGGGCTTCCTCTCTCACGGCGCTCTCTCTCTCTCTCTCATGTGTTTCAG
Seq C2 exon
CGCTGGAGAGGGGGCTCTTGAAAACGCTGCAGAAACTGGATGAGTACCTCAACTCTCCCCTCCCCGACGAAATCGACGAGAACAGCATGGAGGACATCAAATTTTCCACACGTCGGTTTCTGGACGGCGATGAGATGACATTAGCAGACTGTAACCTGCTGCCCAAGCTCCACATTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037242-Clic4:NM_013885:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(7.6=18.9)
A:
NA
C2:
PF134101=GST_C_2=FE(65.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: