GgaINT0136634 @ galGal3
Intron Retention
Gene
ENSGALG00000001262 | CLIC4
Description
NA
Coordinates
chr23:2809310-2810395:-
Coord C1 exon
chr23:2810289-2810395
Coord A exon
chr23:2809492-2810288
Coord C2 exon
chr23:2809310-2809491
Length
797 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTGTTGCTTCTTCTCCTCAGGCT
3' ss Score
9.34
Exon sequences
Seq C1 exon
ATACCTGAAACTTTCTCCAAAGCACCCCGAGTCCTACACTGCTGGAATGGATATTTTTGCCAAATTTTCTGCATTTATCAAAAATTCCAGACCGGAGGCTAACGAAG
Seq A exon
GTAGGTCCCTGCAGTCAGTGCTGTGCTCACATCGCAGCGTTTGCTCAGTGTTATTTGCAACCCATGCGATCTTTCCATTGCACTGAGTTGCAAAACAGCTGCTACAAAAGACGAGGAGGGAACAGTGACTTTAACACAGAGGTATTCCAGCGTTCTGTTCTGCCCTGGCAATGAATGGGCGTGTTCTGGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAGTATGTGTGTGTGTCAGGGTGGCAGAACAGCTGTGCACTTCCCCTTGCTGAGAAATGCTTTTTGTTTCTCTGGGTTCTGCTGCCCTCTGCTGCTGTATGTGCAGAACCTCCACAGCTGCATCCCTCAGTTGTGCCTTGCAGCTGAGCATGTGACATTAAAGAGATTACGTTTCAATGAATAGCTTAGCTTGATGCTAATTACTTTAAGCCAGTTAGGAAAAGTCTTAAGAAACTGACATAAGCCACTTTTTAAACCAAAAATAAACACTCTTAGAGCACTTTTAAAGTGCTGCGAGCTCATGTGCAAACCAACTTTTAGATAGCATGCATCCGTGTGATGTTAAAGGGATTCCAGTCCTGTTTCAGCGTTCCAAGCCACCACAAGTGAGTTCCAAGTCAGCACCAGCAGTGGTGTTGCTGCAGAAGTTGTGCAAGGACCAGCAGTCCTTCGCTGTGCCACTGTCCTGGGGAGCACAGTGATGTGGATTTGGTATTTCAGACCTGGTGTCCCTGTTCAAAAGCTGAATTTGCTTTGAAATTTGCTTGCTGTAGTTTGTTGCTTCTTCTCCTCAG
Seq C2 exon
GCTTAGAACGTGGCCTCTTGAAAACCCTGCAGAAATTGGATGAGTACCTGAACTCTCCTCTCCCTGACGAGATAGATGAGAACAGCATGGAGGATATTACAGTTTCTACCCGCAAGTTTTTGGATGGCAATGAGATGACATTAGCAGACTGCAACCTGCTGCCCAAACTACACATTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001262:ENSGALT00000001916:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.7=100)
A:
NA
C2:
PF134101=GST_C_2=FE(42.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAACTTTCTCCAAAGCACC
R:
CTTCACAATGTGTAGTTTGGGCA
Band lengths:
286-1083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]