DreINT0050874 @ danRer10
Intron Retention
Gene
ENSDARG00000104733 | coq4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
Coordinates
chr5:53773340-53773785:-
Coord C1 exon
chr5:53773656-53773785
Coord A exon
chr5:53773434-53773655
Coord C2 exon
chr5:53773340-53773433
Length
222 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
3' ss Seq
AGTTATTCATTTATTCACAGGTG
3' ss Score
6.72
Exon sequences
Seq C1 exon
AGAGTCACCCCTGACACGAGGGCTGAAGTGAAGTTTGTAGACAATGAGGAATTGGCGTATGTCATGCAACGGTATCGTGAAGTACATGACTTGTTGCATACTTTGCTTGGAATGCCCACAAATATGCTAG
Seq A exon
GTCAGCATTTGGCATTTTATAGATTACATTTTCTGTATGCATAATACAGAACAATCTTTAGTTACTAGAATTATACTTTATTAGTTATCTTTGATACATCAGTTCAGTTTTCACGTAAATGATTTTATGCTAATGTGTAAATGCGAAATCAGAGCTGTGTTATCACCAGTGTTTTTCTTGTTTTAAAACATGGATAGAAAATAGTTATTCATTTATTCACAG
Seq C2 exon
GTGAGGTTGCTGTGAAATGGTTTGAAGCTGCACAAACTGGTCTCCCCATGTGTATATTGGGAGCAGCACTTGGACCCCTTCGACTGTCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104733:ENSDART00000169270:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
NA
C2:
PF050198=Coq4=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACACGAGGGCTGAAGTGA
R:
GACAGACAGTCGAAGGGGTCC
Band lengths:
212-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]