GgaINT0124428 @ galGal3
Intron Retention
Gene
ENSGALG00000004927 | COQ4
Description
NA
Coordinates
chr17:5615555-5616377:-
Coord C1 exon
chr17:5616248-5616377
Coord A exon
chr17:5615649-5616247
Coord C2 exon
chr17:5615555-5615648
Length
599 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGTGCTCTGCTGCCTCCCAGGTG
3' ss Score
10.21
Exon sequences
Seq C1 exon
AAGGTTTCTCCAGACACCCGCATGCCAGCCAAGTTCGTGGATGATGAAGAGCTGGCCTACGTGATCCAGCGGTACCGGGAAGTGCACGACCTGATGCACACCCTGCTGGGCATGCCCACCAACATGCTGG
Seq A exon
GTGAGCTGCCACGTTCCGTGCTGCCCACCGACCCCAGTGATGGTTTTTGGCCCATCGGAATCCCTGATCCCCGGCCCAGAGAGGTGCACGGGGAGGTTGGCAGCATCCCTGTCCCTGCACCGCTGTCCTCCGTCATCTGTGGGTGTTCATTGCCTGCTGGGTTAGACCACAACGTGGTGTTTTGCAAGCTCTGAGCGCAGGCTCGTGGGTTTCCTGGTTGTTCCTTATCTGTGCATCCCCGTGTCCTTTCCCCTCATTTTGTGTCTGACTCAAAGGCACAAGCTGAGCCTTGCTGGTGAGCCAGCAGGAACCAGCATTTCTGGTCCTCCTTGGGAGGTTCTGGCTGAGATGTGACAGTGGCTGAAAATGGGCTTTCCCATGCTGGGAGACGGGGAAAGACGCACGGGGAAATCCTCATTTAGCAGTTGCATCGCTAAAGGTCTCCAGGAGCCCAGCCTGCCTGGGCCATGCCCAGCTTGTGGGGCAGCGACAAGCAGTGCTGCTCCTGGGGGTGGCTGTCCCTGGGGGGTAACGCAGGGCTTCTGTCCCGGTGTGGGACCGTGCCCTGTGCCTGCTCACTGTGCTCTGCTGCCTCCCAG
Seq C2 exon
GTGAGGTGGTGGTGAAATGGTTCGAAGCCGTCCAGACGGGGCTGCCCATGTGTGTGCTGGGAGCAGCGTTTGGCCCCGTTCGTCTCAATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927:ENSGALT00000007881:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
NA
C2:
PF050198=Coq4=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTTCTCCAGACACCCGC
R:
GTGCATTGAGACGAACGGGG
Band lengths:
223-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]