HsaINT0040192 @ hg19
Intron Retention
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19693]
Coordinates
chr9:131094432-131095222:+
Coord C1 exon
chr9:131094432-131094561
Coord A exon
chr9:131094562-131095128
Coord C2 exon
chr9:131095129-131095222
Length
567 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AACACATCCCTCACCCACAGGGG
3' ss Score
9.11
Exon sequences
Seq C1 exon
AGGGTCTCCCCAGACACCCGAGCACCCACCCGCTTCGTGGATGATGAGGAGCTAGCGTATGTGATTCAGCGGTACCGGGAGGTGCACGACATGCTTCACACCCTGCTGGGGATGCCCACCAACATCCTGG
Seq A exon
GTGAGTGCCCCCAACCCTGATGGCCTGTCTCCCTGGGGTGGCTTCAGGGCCAGGGCAGGGCTTGCCTATCTCCACCACCCTCTGCATCACCTGGCTTGGTGCCTCAATTTCTGCTTTACCTGAACATCTTAGTAGCATCTTTGCCACATGTCCCCCTTCTTTCTCCCACTGCCCCTCAGGGCTCCTGCACTAATGGAGCAGCAGAGCCCATCTTCAAGGCTCCTGGTGTCTTTTTAGGCTTTAGCTGCCTCCCTGCTCTGAAACCTCAGTAGCTCCCTAAGGCCTGCAGGAACCATCCTGGAGTGTTTAGCCTGGCTTATGGGGTCATGGGGTCCTCTGCGCCCTGACCCCAGGCTTCCTTTCCATCCCCTACTCCCTTCTGTTCACTCTTGGGCTCTCTCCTGTACTCCAAGCCAAGTGCCCCAGGGCCCAGCACAGGCCAGGACTGGGCACAGCTGACCCCGTAGAGATTAGGGAGGAACAGTGCCTCTCTTTACCCTGCTGTGAGCACCACTGGCCTTTCCTTCAGATAGCTTGTTCACCTCCCAACACATCCCTCACCCACAG
Seq C2 exon
GGGAGATCGTGGTGAAATGGTTTGAGGCTGTCCAGACTGGCCTGCCCATGTGCATCCTGGGTGCATTCTTTGGACCGATCCGACTTGGCGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113-COQ4:NM_016035:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
NA
C2:
PF050198=Coq4=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCCAGACACCCGAG
R:
CCAAGTCGGATCGGTCCAAAG
Band lengths:
214-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)