HsaEX0016827 @ hg19
Exon Skipping
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19693]
Coordinates
chr9:131088058-131095222:+
Coord C1 exon
chr9:131088058-131088160
Coord A exon
chr9:131094432-131094561
Coord C2 exon
chr9:131095129-131095222
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGGAGGCTCATGGTTGTCAGAGG
3' ss Score
-1.95
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAGCGTCCCCGGATTTCGACATCCACCCTCGACCTGGGCAAGCTCCAGAGCCTGCCGGAAGGCTCCCTCGGTCGCGAGTATCTCCGTTTCCTGGATGTGAAC
Seq A exon
AGGGTCTCCCCAGACACCCGAGCACCCACCCGCTTCGTGGATGATGAGGAGCTAGCGTATGTGATTCAGCGGTACCGGGAGGTGCACGACATGCTTCACACCCTGCTGGGGATGCCCACCAACATCCTGG
Seq C2 exon
GGGAGATCGTGGTGAAATGGTTTGAGGCTGTCCAGACTGGCCTGCCCATGTGCATCCTGGGTGCATTCTTTGGACCGATCCGACTTGGCGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.241 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PD(37.0=69.8)
A:
PF050198=Coq4=FE(19.4=100)
C2:
PF050198=Coq4=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTCCCCGGATTTCGA
R:
GAGCGCCAAGTCGGATCG
Band lengths:
194-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)