MmuEX6100093 @ mm10
Exon Skipping
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29790457-29796029:+
Coord C1 exon
chr2:29790457-29790530
Coord A exon
chr2:29795381-29795510
Coord C2 exon
chr2:29795936-29796029
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGAGGGATTATGTTCTCCAGAAG
3' ss Score
0.58
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
AGAGCGTCCCAGGATCTCCCTGTCTACCCTCGACCTGAGCAAGCTTCAGAGCCTGCCTGAAGGCTCACTGGGCC
Seq A exon
AAGGTCTCTCCAGACACACGAGCACCTACACGCTTTGTGGACGATGAAGAGCTAGCCTATGTGATCCAGAGGTACCGTGAAGTGCACGACATGCTCCACACCCTGCTGGGCATGCCCACCAACATGCTCG
Seq C2 exon
GAGAGGTTGTGGTAAAGTGGTTTGAGGCTGTGCAGACCGGCCTACCAATGTGCATCCTGGGAGCACTCTTCGGACCCATCCGCCTCCGTACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-'5-12,'5-5,10-12=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(15.3=100)
A:
PF050198=Coq4=FE(19.4=100)
C2:
PF050198=Coq4=PD(13.0=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTCCCAGGATCTCCC
R:
TGAGTACGGAGGCGGATGG
Band lengths:
167-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types