DreEX0023753 @ danRer10
Exon Skipping
Gene
ENSDARG00000104733 | coq4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
Coordinates
chr5:53773340-53773986:-
Coord C1 exon
chr5:53773854-53773986
Coord A exon
chr5:53773656-53773785
Coord C2 exon
chr5:53773340-53773433
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATGAATCTCGTCTTTTTCAGAGA
3' ss Score
9.77
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
CTATATTTATTTCTGGTATTTTGCCTCTAGAGAGCGCCCAAGGATCCGCCTATCTACATTAGACCTTTCTAATATGTCTGCCTTGCCAGATGGGACTTTAGGAAGAGAATATCTACGTTTCCTTGAGGAAAAT
Seq A exon
AGAGTCACCCCTGACACGAGGGCTGAAGTGAAGTTTGTAGACAATGAGGAATTGGCGTATGTCATGCAACGGTATCGTGAAGTACATGACTTGTTGCATACTTTGCTTGGAATGCCCACAAATATGCTAG
Seq C2 exon
GTGAGGTTGCTGTGAAATGGTTTGAAGCTGCACAAACTGGTCTCCCCATGTGTATATTGGGAGCAGCACTTGGACCCCTTCGACTGTCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104733_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(15.3=100)
A:
PF050198=Coq4=FE(19.4=100)
C2:
PF050198=Coq4=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTCTGGTATTTTGCCTCTAGAGA
R:
GACAGACAGTCGAAGGGGTCC
Band lengths:
218-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]