BtaEX6046393 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98933618-98944279:+
Coord C1 exon
chr11:98933618-98933720
Coord A exon
chr11:98943457-98943586
Coord C2 exon
chr11:98944186-98944279
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCACTTTCATGATCATCAGAGG
3' ss Score
4.43
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAGCGTCCCCGGATCTCGCTGTCCACCCTCGACATGGGCAAGCTCCGGAGTCTGCCCGAGGGCTCCTTTGGCCGCGCGTATCTCCATTTCCTGGATGTGAAT
Seq A exon
AGGGTCTCCCCAGACACCCGCGCACCCACCCGCTTCGTGGACGATGAGGAGCTAGCATACGTGATCCAGCGGTACCGGGAGATCCATGACATGCTCCACGCCCTGCTGGGCATGCCCACCAACATCCTGG
Seq C2 exon
GGGAGATCGTGGTGAAATGGTTTGAGGCTGTCCAGACCGGCCTGCCCATGTGCGTCCTGAGTGCACTCTTTGGACCGATCCGACTCAGCGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664-'5-8,'5-4,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(14.9=95.7)
A:
PF050198=Coq4=FE(29.1=100)
C2:
PF050198=Coq4=FE(20.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGTCCCCGGATCTC
R:
TGGGCGCTGAGTCGGATC
Band lengths:
197-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]