GgaEX6015037 @ galGal4
Exon Skipping
Gene
ENSGALG00000004927 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr17:4984187-4985406:-
Coord C1 exon
chr17:4985304-4985406
Coord A exon
chr17:4984880-4985009
Coord C2 exon
chr17:4984187-4984280
Length
130 bp
Sequences
Splice sites
3' ss Seq
GAGCCTCTTTGCCCTTGCAGAAG
3' ss Score
8.88
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGAGCGGCCTCGCATCCGCCTCTCCACGCTGGACATGGCCCGGCTGGGGGGGCTGCCAGATGGCACCCTGGGCCGTGAGTACATCCGCTTCCTGGAGGACAAC
Seq A exon
AAGGTTTCTCCAGACACCCGCATGCCAGCCAAGTTCGTGGATGATGAAGAGCTGGCCTACGTGATCCAGCGGTACCGGGAAGTGCACGACCTGATGCACACCCTGCTGGGCATGCCCACCAACATGCTGG
Seq C2 exon
GTGAGGTGGTGGTGAAATGGTTCGAAGCCGTCCAGACGGGGCTGCCCATGTGTGTGCTGGGAGCAGCGTTTGGCCCCGTTCGTCTCAATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927-'9-12,'9-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(15.4=100)
A:
PF050198=Coq4=FE(19.5=100)
C2:
PF050198=Coq4=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCATCCGCCTCTCCA
R:
GTGCATTGAGACGAACGGGG
Band lengths:
188-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]