MmuEX6100093 @ mm9
Exon Skipping
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29645977-29651549:+
Coord C1 exon
chr2:29645977-29646050
Coord A exon
chr2:29650901-29651030
Coord C2 exon
chr2:29651456-29651549
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGAGGGATTATGTTCTCCAGAAG
3' ss Score
0.58
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
AGAGCGTCCCAGGATCTCCCTGTCTACCCTCGACCTGAGCAAGCTTCAGAGCCTGCCTGAAGGCTCACTGGGCC
Seq A exon
AAGGTCTCTCCAGACACACGAGCACCTACACGCTTTGTGGACGATGAAGAGCTAGCCTATGTGATCCAGAGGTACCGTGAAGTGCACGACATGCTCCACACCCTGCTGGGCATGCCCACCAACATGCTCG
Seq C2 exon
GAGAGGTTGTGGTAAAGTGGTTTGAGGCTGTGCAGACCGGCCTACCAATGTGCATCCTGGGAGCACTCTTCGGACCCATCCGCCTCCGTACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-'3-8,'3-4,6-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(15.3=100)
A:
PF050198=Coq4=FE(19.4=100)
C2:
PF050198=Coq4=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTCCCAGGATCTCCC
R:
TGAGTACGGAGGCGGATGG
Band lengths:
167-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: