HsaINT0040191 @ hg19
Intron Retention
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19693]
Coordinates
chr9:131088058-131094561:+
Coord C1 exon
chr9:131088058-131088160
Coord A exon
chr9:131088161-131094431
Coord C2 exon
chr9:131094432-131094561
Length
6271 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GGGAGGCTCATGGTTGTCAGAGG
3' ss Score
-1.95
Exon sequences
Seq C1 exon
GGAGCGTCCCCGGATTTCGACATCCACCCTCGACCTGGGCAAGCTCCAGAGCCTGCCGGAAGGCTCCCTCGGTCGCGAGTATCTCCGTTTCCTGGATGTGAAC
Seq A exon
GTGAGTTTTCAGCTCCTGTGTATCTGGCAGTCACCAGACAGGACAGAGGAATAGCACAGGCATGACACCCTGAGGAAAGAGGAGCCCTGAGCTGCCACCATTGGCAGGAGTGCTCTTCAGGCTCATGCCAAGGCTTTGTCATTTTCTATGGGATAGGCAAATGGGTGGGAACATGCCTGCAATTGATAATACTGGCCAGTGTTCATTAACCTCGCACTGCATGCCTGATGCCAGCCTCATCCGTGATCTTGCTGAATCCCCCCACAACTCTGTCAAGTATGTTCTATTATTATCCTCTTTTAGCAGATAAGGAAACAGAGGCTCAGAGCAGTGAAGCAAACTTGCTAATTCCACATAACTGGTATTAATGGAGATAGTAATCAATCCCAGATCATGCTCTTCACTGCTGTACTGTATCCCTTTATTCCAGGGACATTGCTTTCCCTACGGTATGGCAGGTGTGGCACTCTCCAGCCCCTCCAGCCCCAGGCAGGGAGGACAAGGAGAGGGGGAAAGGGGGTGTCCCGACTATTGGCAAACTCATTCACTAACTGAGGCTCTGCTATGTGCCATCCCTTTTTTTTTTTGAGTCGCTCTGTCGCCCAGGCTAGAGTGCAGTGGTGCGATCTCTGCTCACTGCAAGCTCCGCCTCCCAGGTACACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACGACGCCCGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCGTGCTAGCCAGGATGGTCTCGATCTCCTGACCACGTGATCCGCCCGCATCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACAGCGCCCGGCCCATCCTTTTTGTTTTGTTTTGTTTTGAGACAGGGTCCCGCTCTGCCACCCAGGCTGGAGTGCAGTGGCGCCGTCTCGGCTCACTGCAACTCAGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCAACCCCCCACGTAGCTGGGACTACAGGTGCACACCACAACGCCCAGCTAATTTTTGTACTTTTAGTAGAGAGGGGTTTTACCATATTAACCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAATGCTGGGACTACAGGTGTGAGCCACCGTGCCCAGCCCAACCATTGTTTTGTGTACAGGGGATATAATGGTGAACTAGACAGCCAAGTTCCCTGCCCTCATTTCTATTCTACTTCGAGAGGTAGACAATAAAATAGTTTTTAAAAATTTTCAGGGAAGGCACAGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTGGCGGGAGGACCACCTAAGGTCAGGAGTTTGAGACCAGTCTGACCAACATGGTGGAAACCTGTCTCTACTAAAAATACAAAAATTAGCTAGGTGTGATGGTGTGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGATTGAACCCGGGAGGCACAGGTTGCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGTCTCCAACAAAACAAAACAAAAAAATTCATATAAAAATACAGGTAAAATGTTTCAAGTAATTAGAATATTCTGGCACTGGTCCATGCGTGTTGGCTCATGCCTGTAATCCTAATACTTTGGGGGGCTGAAGTGGGCGGATCACTTGAGCCCAGGAGTTTGAGACCAGCCTGGACAACATGGTGAAACCCTGTCTCTGCAAAAAATGCAAAAATTAGCCAAGTGTGGTGGTGTATACCCATAGTCCCAGCTACCTGGGAGGGAGTTTGAGGTAGGAGGATCAGTTGAGCCCAGGAGGTCGAGGGCGGTGAGCCGTAATCACACCACTACACTCCAGCTTGGACAACAGAGCAAGACTCTGTCTCAAAAATAAAAAAAAGTATACCAGCACTATTGTCAGCAGTTGGGATACAGTGGACAAAACCAGCAAAAAGCCTGCCTTTGTGGAACTTACATTCTAGCAGCTATGAAGAGAACAAGTTAGTGTGATAGAAGACAGCTTTGGTATTGGGAAGGGTACAGCCACTTCTGACTGGGTGGTCAGGGCCGGCTCCTCTGAGGAGACTTGGAAGGTAAGGAGGAGCCAACCCTGTGGAGAGCTGAGGAGGAGCATTCTGAGTAGAGGGAATGGCAAGGGCAAAGGCCCCTTGTGTTTAGGAAAAGGAAGGTTGACCAGTGTGGCCGCAGAGGAGGGAGTAGCAGGGAGACAGTGAGTGGGCTGGAAGGGGAGCCAGGGCTGCGCCCTGTAGGCCACCAGAAGGAGGAGTCTGTATTTTGTAATAGGAGCAGTAGGAAACTTGTGGAAGGTTTTGAGCAGGACAGTAAAGTGACCTGATTTGTAAAGGACCTTAGGATCCAGTTGGCCCATCTTCCCTGTCCCTGTCCCATCTTCCCTCCCTCCTGCAACACAGATACATCCCATCAAGGCACCCCTGCCAAATGGCGAGCCAGTCTGGCTGATGGAGGTGAGGGGTCTCCAAAGGTTGCCCTAGAACAGTTTCTCAAGCCGGGCATGTTAATGTTTAGGCTGGATCACTCTTTGTTGTGGGGGCGGTCCTGAGCCTGGTAGGATGTTTAGTGGCATCCCTGGCTTCTACCCACTGGATGCCAGGAGCACCCCCCCGTCAAGTTGTGACAACCACAGATGTCTCCAGAGATTACAGATGTTCCCTGGTGGGCAGTTGAGAACCACTGCTCTGAATGGTTATTGTCCCCGAGACGATGTTCTGTTCCTCACAGTCTCCTGCACAGCTACCTTGACGGGGCGATCACCTGCACTATTTTAAACCATCTCTCTCAGATTTCACCAGGATGCAAGTCATTTCATCAGTGGGAAACTCACCAGGGTGACCTGCCTCAAGTGCTACACAGGGAGGGACAGTCTGAATTTCCCCCAGTCTTTAGCCCTGTCGCTGTGGAGGGGAGGGGGTAGCAGGGACAGGACTGCTAGGACACCTTGCTCAGCCACAGCCCCACTTGTAACCGCGCTGGCGATTGTGACACTTGTAGAGCAAGGAAATCAGCAGCTCATGGAATGTGAAGGAGCACCTTTGTCCCCAGAGAGATTTAGATAAAGGTTCAAGGTGAGGCTACCCTCCCCTCCCTGAGGCTGATTTTGGTGAGAGGTGTGGTCATCTTGTAGTATCAAGACTACAGGCATGGGCTTGAGAATTAGGAGGAGCCTGAGTGAGAATCCTGGCTCTCTTCCCAGCTTTACAAGCCTGGACAAATCCTTTGACCTCGCTGAGTCTCAGGTTCCTCATCAGAAGTAAGAGGACCTCCCATATATCTTCCAGGGCACTTATCGGCCTTGGTAATGGATATTAAGGCCACTGGCTTTGGAATCCAGCAGACTTTGTTTCAAATGCTGACTCGGCCACTTTACTAGCTGTGTGATCTTGGGCAAATTACTTTATCTCTCTGAGCCTTGTTTTCCTTATTTTTATTTATTTATTTATTTTTTTGAGTCTCGCTCTGTCACCCAGGCTGGAGGGCAGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCTGGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCACGCCACCAGGCCTGGCTATTTTTTGTATTTTTAGTATAGGCGGGATTTCATCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCGCTGGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACCACGCCCGGCCCTTGTTTTCCTTATCTATATCTGCAGTAATAACAGTATTTACCTCCAAGATTGCAAGGATGAAAGGATAATATATGTAAAAGACACCCTAGGTGCCGGCACCTGGTGGATACTCTATGATCACCTTCAGCTTCACACAGCAGGCTAAGGCCATTCTTTGGGAACAGGAAGACCAGGCTGTTCCCACTGTGTATGGGTGCTGCTGAGTACTCAGAGGCAGTGGGCAGTTAAGAGGAGAAGAGTTCTGGGATCAGAAAAGTGCCCAGGACTGGCCTTTTATTCATATGTTCAAGAGGTGTTCATTCATCCAGGCCCTGGATCAGGCTACTGGAGGTAAAAGAATAAGTGAAACAGAGCCAGTCCTGCCCTTGTGTAGCAGACAGGCTGTCTGGATACTGTCCATAAAAATAAAATGTGATCGGCTGGGCACGGTGGCTCACAACTGTAATCCCAGCTCTCTGGGAGGCCCAGGCGGGTGGATCACGAAGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAAAAAAATTAGCCGGGTGTAGTGGCACGTGCCTGTAATCCTAGCTACTCAGGAAGCTGAGGCAGAAGAATTGCTTGAATCCGGGAGGAGGAGATTGCAGTAAGCCGAGATTGCACCACGGCACTCCAACCTGGGCGACAGAGTGAGACTCCATCTCAAAAAATAAAAATAAAAATAAATAAATAAAATGTGAGCACGTAGGTAATTTTTAATTTTCTGCCAGCTACTTTAATAGCAAAAAGAAATTAATTTTTTTGCTATTAAAATTAAGGTGGAATTTTTTTGTTTGTTTTTTTGAGATAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGTGCCATCTCAGCTCACTGCAACCTCTGCCTTCTGGGATCAAGCAATTCTCTTGTCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCGCCACCATGCCTGGCTAATTTTTGACCATATTGGTCAGGCTGGCCTTGAGCTCCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTGTAACCATGAGTCACCGTGCCTGGCTAGAATTGATTTTAAATATGCATCTTGTTTAGCCCAATATATCCAAAGTATTATTTCAACAAGTAATCAATTTTCTTTTTTTTTTTTTTTTTGAGACGAAGTCTCACTCTGTAGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCGCTGCAAGCTCCGCCTCCCGGGCTTACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCGCCACGCCCGGAGAATTTTTTGTATTTTTAGTAGAGACGGAGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGATCCACCTGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGTATTTTTAAATCATTGAGAGTTTTACATTTTTTTCATACTAAGCATTTGAAGTCTCGTGTGTATTTTATATGATCAGCACATCTCGCTTGGACAACTTTCTTGGCCACATGTGGCAAGCGGCTGCCATACTGGACAGTGTAGGTCTAGGAGACATTAATACTCACATCCACTAAACATCAAGGTACAGTTATTTTGAGTGCCACTAAGAGGTGAATGATGTTTCCAGAGACCATAACATGAACCCACTTGGTCTGTAGGTTAGGGGTGGCCTCTCTGTGGTGGGGGGAAGGGATGGGGGACAGGGGACACTTAACCCAGGTCATGAAGGATAAGTAGGAGTTACCACAGTGAAGATGGAGGTAGTGGGAGAGAACACCCCAAGCTGGGAGCAAGTTATGCTAGGATCAGGGTCTTTGGGGCTTCATTATTTATTTTTAGAGACAATGTCTTGCTTGAGTGCAGTGGTATAGTCATAGCTCCCTGTAACCTCAAACTCCTGGGCTCAAGCATCCTCCTGTCCCAAGCCTCCTGAGTAGCTGGGACTATAGGCACACACCACCACACCTGACTAATTTTTGTATTTTTTTTGTTCTGGGTTTTTTTTTTCTTTGAGACAGAGTCTCTGTCACCCAGGCAGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGTGCACCACCACACCCGGCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCGTATTGGTCAGGCTGGTGTTGAACTCCTGATCTCAGGTGATCCGCCCACCTTAGCCTCCCAAAGTGCTGGGATTTACAGGCATGAGCCTCGGCCCCTGGCCAGTCGCCAGAGTTTTCTAGTAGGTATGAGTTAGGTGAGAGTTGTGACGGTGTCAGAGACAGACTGGCAAATCGGGCCCTGGGAACCATCAGGAAGGGTTCTAGGGGAGGCTCATGGTTGTCAG
Seq C2 exon
AGGGTCTCCCCAGACACCCGAGCACCCACCCGCTTCGTGGATGATGAGGAGCTAGCGTATGTGATTCAGCGGTACCGGGAGGTGCACGACATGCTTCACACCCTGCTGGGGATGCCCACCAACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113-COQ4:NM_016035:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.241
Domain overlap (PFAM):
C1:
PF050198=Coq4=PD(37.0=69.8)
A:
NA
C2:
PF050198=Coq4=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)