BtaINT0042814 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98933618-98942404:+
Coord C1 exon
chr11:98933618-98933720
Coord A exon
chr11:98933721-98941796
Coord C2 exon
chr11:98941797-98942404
Length
8076 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATAGTAATATCTCCTCCCAGGTG
3' ss Score
7.3
Exon sequences
Seq C1 exon
GGAGCGTCCCCGGATCTCGCTGTCCACCCTCGACATGGGCAAGCTCCGGAGTCTGCCCGAGGGCTCCTTTGGCCGCGCGTATCTCCATTTCCTGGATGTGAAT
Seq A exon
GTGAGTCTCCAGCTTCTGTGCGTTTGGCAGTCACCAGGGAGGGCAGATGAATGGCACATGAGTAATGTCCTGAGGAACGAGGGGCCTGTGCTTCCACCATGGGCAGCACTGCCTTGCAGTCTCTCGTGCCAAGGCATTGGCATTTTCTGTGGTACAGGCACGTGGGCCAGGAACATCGCTCCAAGCAATTACACTGCCCTGCACTTACTAACCTCTACTGAGTGCCCCATGGCGGGTTCACATGTGATCTCACTGAATTCCACCCGAACAACTCTGCCAAAATGAGGAAACTAAGGCTCAGAGAGGTTAAGCAACTTGCTGATTTCACAGGCCAGTATTAACGGAGGCAATATTCAAATCAGGATTATGCTTTTAACTATCACATCGTGTCCCCTGTTGTAGAGACAGTGTGCCCCTTGGGTGTGACAAGTTGTGACACTCTCCAACCCCAGCCAGAGAGGACACGGACTAGGGCGTCAGGACCCCCAACTACTGAGGAACTCATTCATTTCTTCAGAATCAGTCATGCGCCATCCACTGATCCAAGTGTGGCAACTTAGACAAGGTCTTGCCCTCATGGAACTAATATTCTAGTGGGGGACGGGTAGACTATAAAGCAGTAAAAGAAGAAAACTTTAATATGAAAATTCAGGCAAAATATTTATTTAGTACTTAAAACATACCAGATGGGACTTTTCCCGTGGTCCAGTGGCTGCCTTCCAGTGGCTGCCTTCTAGTTCAGTGCCCGGTTAGGGAACTAAGATCCTGCATGCCTCAGTGCAGCCAAAAGAAGAAAAATCACACCAGTGTCCTCAGCAGCTGGGACACAGTGAATCAAACCAGGAAAGCACCTGTCCTTTGGGGCTTCTGTTCTCGTAGGTGCTGCTGTGAGGACGCCAGTCAACCCGATAGAGGGCAAAGGTGGGGTCGGGGTGGCTGGTGGCCCCTTCCCACAGGGTGGTCATAGGAGTCCCTGCCGAAACACCGTGTACCTCAGACTAGGAAGTGAAAGAAAGTGAAGTTGCTCAGCCGTGTCTGACTCTTTACGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCGGGCAAGAATGCTGGAGTGGGGTGCCATTTCCTTCTCCAGGGGATCTCCCCGACCCAGGGATCGAACCCAGGTCTCCCGCATTGCAAGTGGACACTTTAACCTCTGAGCCACCAGGGAAGCACTCAGGCTAGGACTTGAACCCAGCCAAAACCCACAGTTGTGAAGCTCAGGTTCTTGATGTCTCATCACAGACAATTGAGAGGCAAAGTGGTAAGAAGTGGATTTATTCAGAGAGAAACTCACTTCACAGAGTGTGAGCCACCGCAGAAGGCGAGAGTGGTGGCCTCTAAATGTGGCAGACTTCGTTCTTTCATGGACTGGGTAATTTCATAGGCTAATGAATGGGAGGATTATTGCAACCATTTTGGAGAAGGGGTGGAGATTTCCAGGAGGCTGAGGAGGAGTCAGTTCTGAGGAGAACTGGGGAAGAGCATTCTGAGCGGAGGAGCTGGCGAGTGCCAGGCTATGTGTGTTTAGGAGAAGGAAAACTGATCCACGTGGCCAGTATAGCTTCACAGGAATGAGTTGTGGGGAGGCCCCCAGTGAGCTGGGAGGTCGGCCTAGCTCAGCCAGGCCCTGCACACCACAGGAAGTATTACCCTGAAACTGGGTTACCCCCAAAGCCATTTCTTGGTGGGTGTTGAGCCTGAAGATACAACCAAACCAAAGATCAGGAGAAGGAAGGATTTGTTACTTGCAGTGTGTATCGGAGAAGGCAATGGCAACCCACTCCAGTATTCTTGCCTAGAGAATCCCTTGGACAGGGACTTCCCTGGTGGTCCAGTGGCCAAGACTCTGCGCTCCCAACGCAGGGGGCCTGGGTTCGATCCCTGGACAAGGAGCTAGATCCCACATGCAGCAACTAAGACCCAGTGCAGCCAAATTAAAATAAATAAATGATTAAAAAAAAAAAGAATCCCTTGGACAGAGGAGCTGGTGGGCTGCTGTCCATGGGGTCACACAGAATCGGACACGACTGAAGCGACTCAGCATGCATGCATGCATGCATGCATGGAGAAGACCAGGGATCTTTCCCAAAACATTGTCTGTTAACAGCAAAACTGGGGAAACTTTAAGCTAACAGTATATTCATATTCATGAAGGGGCTTGTTGTAGTTCAGAATTCCATAGACAGAGGAGCCTGGTGGGTTACAGCCCAGTTCAGTTCAGTCGCTCAGTTGTGTCCGACTCTTTGCGACTCCATGGACTGCAGCACGCCAGGCTTCCCTGTCCATCACCAACTCCTAGAGCTTGCTTAAACTCATGTTTACTGAGTTGGTGATGCCATCCAACCATCTCCTCCTCTGTCATCCCTTTCTCCTCCTGCCTTCAATCATTCCCAGCACCAGGGTCTTTTCTAATGAGTCAGCTCCTTGCACCAGGTGGCCAAAGGATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTTAGGACAGATTTCTTTGAGGATTGACTGGTTTGATCTCCTTGCAGTCTAAGGGACTCTCAAGAGTCTTCTCCAACACCACGGTTCAAAATCATAAATTCTTCGGCGCTCAGCTTTCTTTATGGTTCAACTCTCACATGCATAATCACTGGAAGAACCATAGCTTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTAAGTATGCTGTCTAGGTTGGTCATAGCTTTTCTTCCAAGGAGTAACCATCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAAGAAAATAAAAGTCTCACTTTTTCCATTGTTTCCCCATCTATTTGCCTTGAGGTGATGGGACCAGATGCCATGATCTTCATTTTCTGAATGTCGAATTTTAAGCCAGCTTTTTCACTCTCCTCTTTCACCTTCACCAAGAGGCTCTTTAGTTCCTCTTCACTTTCTGCCATAATGGTGATATCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCTTCTGCTTCATCCAGCCTGGCATTTCGCATGATGTACTCTGTGTAAACTCTTGCAAACTCTGGGAGTTGGTGATGGACAGGGAAGACTGGCATGCTGCAGTCCTTGGGGTCACAGAGTCGAACATGAATGAGCAACTGAACTGAACTCTGCATATCAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACATACTCCTTTCCCAATTTTGTTGTTCCATGTCTAGTTCTAACTGTTCTTTCTTGATCTGCATATAGAGGTCAAGAGGCAGGTAAGCTGGTCTGGTATTCCTATCTCTTGAAGAATTTTCGTTTGTTGTGATCTACACAGTCAAAGGCTTTAGCACAGTCAATGAAGCAGAAGTAGATATTTTTCTGGAATTCTTTTGCTTTTTCTGTGATCCAACCGATGTTGCCAATTTGATCTCTGGTTCCTCTGCTTTTTCTAAATCCAGCTTGAACATCTGGAAGTTTTCAGTTCACGTACTGTTGAAGCCTAGCTTGGAGAATTTTGAGCATTACTTTGCTAGCGTGTGAAATGAGTGCAATTGTGCAGTAGTTTGAACATCCTTTGGCATTGCCTTTCTTTGGGGTTGGAATGAAAACTGACCTTTTCTAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAGCTGGAATTCCATCACCTCCACTAGCTTTGTTCATAGTGATGCTTCCTAAGGCCCACTTGACTTCGCATTCTAGGAGTCTGGCTCTAGGTGAGTGATCACACCATTGTAGTTATCTGGGTCATTAAGATTTTTTTGTATAATTCTGTGTATTCTTGCCACCTCTTCTTGATATCTTCTACTTCTTTTAGTTCCATACTGTTTCTGTCCTTTATCGAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGACGAGATCTCTTTAGTCTTTCCCATTCTATTGTTTCCTCTATTTCTTTGCATTGATCACTGAGGAAGTGATTCTCTCTCCTTGTTATTTTTTGGAACTCTGCATTCAAGTGGTGGAACTCTGCATTCAAGTGTGTATATCTCTCCTTTTCCCCTTTGACTATCACTTCTCTTTTCTCAGTTATTTGTAAGGCCTCCTCAGACAATCATTTTGCCTTTTTGCATTTCTTTTCCTTGGGGATTGTTTTGATCACTGTCCCCTGTACAGTGTCACGAACCTGTGTCCATAGTTCTTCAGGCACTCTATCAGATCTTGAGCAGAGAATTCAGCATAGAATTGGGGCAAAGGTCAACAGGGTCCAAGTCTTAGTTGATTGATATCAGGAGAGTCAGAGAAGGTCAACATCATCATATCTTAGGTTTTAACTAGTCTGGGATCTTAGCGTGTAGATACCACCCTCCACCTGGGTGGAGGCCTTAGTTCCTATAGAACGTGTAAAGATACATATCAGATTGTTAATGTATATTCTTTGAGGCGGAACTGGGACTCTTTTCTCATTGAACTGTTATCTCCTGATGGCTCAGACAGTAAGGAGTCTGCCTACAGTGCAGGAAAGCCAGATTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGAAATGGCAACCTACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTCAGATCAGATCAGTCTCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTGAGACTCACGTCCATCGAGTCAGGGATGCCATCCAGCCATCTCATACTCTGTTGTCCCCTCTCATCCTCTGTTGTCCCCTTCTCCTCTTGCTCCCAATCCCTTCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGAATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTTAAAAGCATCAATCCTTCGGCGCTCAGCTTTCTTCACAGTCCAACTGTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGAACCTTTGTTAGCAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTTCTTCCAAAGAGTAAGTGTCTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCTGACACTGTTTCCACTATTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCATTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTACCATAAGGGTGGTGTCATCTGTATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGACTCCAGCTTGTGTTTCTTCCAGTCCAGCGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACATACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAAATTTCTCAAGAGGCAGATCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACAGTCAAAAGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCACGGTTCACATATTGCTGAAGCCTGGCTTGCAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATCAGTGCAACTGTGCGGTACTTTGAGCATTCTTTGGCATTGTCTTTCTTTGGGATTGGAATGAAAACTCACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGTATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGGAATAGCTCAACTGGAATTCTATCACCTCCACTGGCTTTGTTCGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTGAGTGATCACACCATCGTGATTGTCTTGGTCGTGAAGATCTCTTTTGTACAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTTATCAAGCCCATCTTTGCATGAAATGTTCCTTTGGTATCTCTGATTTTCTTGAAGAGATCTCTAGTGTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTAATTGCTGAAGAAGGCTTTCTTATCTCTTCTTGCTATTCTTTGGAACTCTGCATTCAGATGTTTATATCTTTCCTTTTCTTATTTGCTTTTCGCTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCCCAGCCTAGGGAGCTACAGTCCGTGGGGTCAAAAGGGTCAGACATGACTGAGCAACTAACACTTTCACTTCTCTTTCATTGTTTCTTGACTGCTTTTCCTCTGTTCCTGCATCCCTTTATTCCTTTAAGATCATTAATTACTGAGACATTTTGAAGGGCAAGCATTGTGTCCAGGCTTAGATCCCAAGTTGACTTAGGCCAAAATGGCTTCTCTAGTGAGAAGTATGTCATGCCTAGTTCTCTTTAAGTCAAGAATGTCATGCCTGGTTCTCTTTCTCCATGGGCCCCTTACCCTATCTGCTTAGAGACAAAGTCTGTATTTTGTAATAGAAGCAATAGGAAGCCATTGAAGTTTCGAGCCAGGTAGTAACATGATCTGCTTTATAAAAGGACCTTAGGATACAGCAGGGCAGAGTCCCCGTTCCTACCCTTCCCTGCCCCCAGCACATCCACTTCCCATCACAGTACCTCTGTCAGGTCGCCATCCAGTCCAGCTGCAGGAGCCAACCAGGCTGGAGGAGGTGAAAGAGTGAGCAAAGATTGCTCTCGAGCTGGGTTTCTCAACCTTGCCACTGTTGACTTTGGGGCTGGAGAATTGTTTGTTGTAGGGCAGCGCTGTGCATTGTAGGAAACATCCCTGGCCTCTACGTGCTAGATTCCAGTAGCACTGGCCCCACTAAGTTGTGACAACCTTAAATGGCTCCAGACACTGCAGCTATCCCCGGGTAGATGGTTGAGAAGTCTGCTTTAGATTTTGTCCCTGAGAAAATAATCATCTTCCTATCCTCTGCTGTACTGCTCCCTGTTGCCCACGCCCCATATTATACCATCGCCCAGAAATTTCACCAAGATGCAAGTTTATTTCATCAGTGGGAACTCCACCAGGGTGACCTGCTCCAGGTACCACCTAGAAAAGGATATTCTCCTTCTGAAGTCCCCCAGAGCCTTTTGTCCTGTTGTAGAGGGGATGGGACTGCCAAGGCCTCCCTGGGCAGCTTGCTCAGCCACAGCCTTAAGTAGCAGCCCTGGAGATTGTGACACTTCTAGAGTATAGACACCTGGCAGCCCACAAAATGTAAGGGAACACCTTTGTCTCAGTGGAGGTTTAGATCAAAGGTCAAGGTCAGGCCACCTTCCCTGAGACTGACTGCTAGCCTTTCTTTCCATCTTTAAAGCTCTGGGCAAATCACTTGACCTCTGAGCCTCAGACTCTTTTATCTGAGGTGAGGAAACCTCATGTTTAACTTCCAGGGCACTTATATGGCTGATTAATAATGGCTGTTAAGGCTTTAGAATCCAGCAGGCTGTGTTCGGAATCCTGACTCAGCCACTTGATTAGCTGTGTGATCTCTGACAAAGTTACTTTATCTCTCCTTTTTTTCTTATCTGTATCTGAGGCTGATAGTAATATCTCCTCCCAG
Seq C2 exon
GTGGCCTCAGGACGTGGCATGACGGTATGTACAGAGGACTTCATACAGTGCTGAAACATAGTAGGTGTCAGCCGTCACTGACCAGCTTCAGCTTCACACAGCAGACAGAACTCTATAGAAGAAATTAGAACCAGGGACCCAATGAAGTCACAAACACAGACCGTGGCATTGGGCTAGTAGCCCCCAAAATAAAGACACCAAATCCCTTGACCTCTGGACAGGCTGAGCTCATGCTCTGAAACTAGGAAGACCTACTCTGCATGGTGCAGCTGAGAACTCGGAGAGGCAGTGGGCGGAAACAGAAGGACAGCTGGTATCCCTGCCTGGGGTCAGAAAGTGCCTGGGGCTGGCCTTTTACTCCTGCATTTACAGGAGGTTGATTCCCAGGCCTTGGAGACAGAACAAGAGAGCCCTGTCCTGGGCTGATGACCAGCTGCTGCAGCACTGTTTACGGAGATAGCATGCACACTATAAAGGGAATTTAGAATCTGCTGCCATCAGATAAACAAAATAGAAACAGGTAGAATTACTTTTAATAACATATCTTGTTTTCGTGTGCTAAAATACCATTTCTGTATGTAATCGATACTATAAAATTATGAGATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664:ENSBTAT00000006120:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(14.9=95.7)
A:
NA
C2:
PF050198=Coq4=PD(6.7=38.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development