DreINT0050873 @ danRer10
Intron Retention
Gene
ENSDARG00000104733 | coq4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
Coordinates
chr5:53773656-53773986:-
Coord C1 exon
chr5:53773854-53773986
Coord A exon
chr5:53773786-53773853
Coord C2 exon
chr5:53773656-53773785
Length
68 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
ATGAATCTCGTCTTTTTCAGAGA
3' ss Score
9.77
Exon sequences
Seq C1 exon
CTATATTTATTTCTGGTATTTTGCCTCTAGAGAGCGCCCAAGGATCCGCCTATCTACATTAGACCTTTCTAATATGTCTGCCTTGCCAGATGGGACTTTAGGAAGAGAATATCTACGTTTCCTTGAGGAAAAT
Seq A exon
GTAAGACATGAAATTTCAAGTACAGAATTTCTAGGTAGATCAAATGAAATGAATCTCGTCTTTTTCAG
Seq C2 exon
AGAGTCACCCCTGACACGAGGGCTGAAGTGAAGTTTGTAGACAATGAGGAATTGGCGTATGTCATGCAACGGTATCGTGAAGTACATGACTTGTTGCATACTTTGCTTGGAATGCCCACAAATATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104733:ENSDART00000169270:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(15.3=100)
A:
NA
C2:
PF050198=Coq4=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGAGAGCGCCCAAGGATC
R:
TACCGTTGCATGACATACGCC
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]