RnoINT0040869 @ rn6
Intron Retention
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8351321-8356177:+
Coord C1 exon
chr3:8351321-8351423
Coord A exon
chr3:8351424-8356047
Coord C2 exon
chr3:8356048-8356177
Length
4624 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GGAGGGGTTGTGTTCTCCAGAAA
3' ss Score
3.86
Exon sequences
Seq C1 exon
AGAGCGTCCCCGAATCTCACTGTCTACCCTCGATCTAAGTAAGCTCCAGAGCCTGCCTGAAGGCTCTCTGGGCCGTGAGTATCTGCGCTTCCTGAATGCGAAT
Seq A exon
GTGAGTTTCCAGGTTCTGTGTATCCCGCAGTACCCAATAAGGGTAGAGGGGTGGCACGGGAGGATATAGCCTAGGGCCGGAGGATGCTTAAGCTGCCAACTAAGGCAGGAGTGCTTTTCAGGCTTTGATGTTTTCTGTGTGATGGATGAATGGTCTGATGATGTCATACCAAATACTGGAGGTTACTAACCTCCTGTTGCGTGCCAGCTCCCAGGCAAGTACGTGATCTGGCTAGATCCTCCCAGTGACCTTTCTAGTAAGTCCTGTTGTCAACGCCTCTTGCATATGATGAGGACTCAGTCACAGAGCAAGCAGTGAAACAACTTCACAGCTAGTCCAACCCTGGGCCATATTCCACTCAGAGTACTGGGAACCACTGTGCTGTGGCCAGTGTAGGACTCTCCAACACCAGGCAAGACAGATGGTGGTAGGAGGGGATTCCCAACTACTGAAAGACTCACTACTCACATCTGCCACCCATCATTCCGTGCGCTGCCATGTAGCAAGCCAGGTCCCTGACCTCCTGGAGCTTGTGCTCTTATTATTACGAAGGCAGTTAATAAAGTAGTTTTAAAAATTGAAATGAAAAATGTGTGTGTGAAAAAAAATATATAGCTCAATTAGCCAAGTTCACGTAGAAAGCAAGTTCAGTCCTCAGCTTGAACCTGCATAGAATAGAGGAAAGGGAATCAGAAACTCAGCCAGCCTTACCCACATAGTGAGTTTTTGGCTATCCTGGGTTATATAAGACCCCATCCCTCCTGCTTTTTGAGGTAAAGTATTTCTTTTTTTTTTTTTTTCTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGAGGTAAAGTATTTCTTAAGAACTTAGAATGCACCAGACAGCATGCTCAGCCGAGGAACACACCGAACTAAAATAGCCAAACATCTGTGAGCCTCAGCCTACAGGCAGGCATGCTAAGGGAACCAGACATGGGGCAGAGGATATCTCTGGATGGAGTAGGGTAGCTACGGCTGGTTCACTGGTCAGGAGAAACCTTTCCAGGGACACTTGGAAGATGGTCAGCTTTGTAGAGTTTTGGGGAAGAGCACTCTAAGCAGATGAATCAAACAGCTCAAATAAGCAGGATGACTCAGGGGCTGGGAAGATAGCTCCACTGGCTCAGTGCTTGCTGCTTAAACCTGGGCTCCTGAGCTTGTAAAAGCAGACCTGGCAGTTCATACCCACAACCCTAACGCTGTGGAGGGAGGAATGGCTGACCCCAGGAGGTCACTGTCCAGCCAGCTGCCCGGTATCAGCAGGCCCCTGGCGCAGTTAGAGGTCTGTCTCAGAAACACCAACCTCTGGTACCACCCATGTCATACATGTGCATATGAGCACATAAGCCAATTGCTCTGATGTGCTCCTACAAGCCTGGTTGAAGCAGGAGGGTTACCACTGGATTCAAGGTCAACCTTGGCCACCTAGGAAGTAACCATGCCTACTTATAGGGCAAGACCCTGTCTTTAAAACACAAGCACGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAACAAAAAAACAAAAAAACAAAAAAACACAAGCACACATCCTGGAGAGACAGCTCAGTGGTTAAGAGTGCTTACTGCTCTTTCAGAGGACCTGGTTCAATCCCCAGTGCCCACATGGCCGCTCACAGCCTTCTCTAGCTCTAGTTCCAGGGGATCTAACACGCTCTTCTGGCCTTCGTAGGCAGCAGGCAAACATTTGGCACAGATGTACATACGGGAGAAGCAGTCATTTGTATATTAGAATAACAAAGCAGAGCTCAGTGGTAGATAGCTCGACATTCCTAGGGCCCTGGGCTCCATCCCCAGCATAAGTCCACGGACAGACAAAATACACGACAGAGGCATGAGTAGGGGAAAGGGAAAGGTTAGGCTGATAGTTGTGCTGGGGCCTTGGGAAAGAAACTGCATTTTGTAACAGGAGCTACTAAAGGTAATTGGAAAGTTTGAAAATAGTAATCCCAGATGGGTAGCTCTCTGGTCTACACAGTTCTAGGACAGCCAGGGCTACACAGAGACCCTCTCTCAAAATGAAATAAAGGAAAGAACAGTATAATACAGTTTTCCTATCCACCTGCCCCCTCCCTCTATCATACCCACGTCTCCTCGAAGCTAAATGGCTCTCCAGCCAGAAGCCAGCCAGGCTGAAGGAGGAGGAGGGTGACAAAGGGTCACTGTAGAACAAGTCCTTAGTGTTTGTTATGCTACTGATGCTGTGGGCTGGGCCGTTCTTGGTTGGGAATTCCAACCTCTCCCTCCCGGATGCCAGTTGACTCCCTCATCCATCCAGTAGTAGCAACCTTAAGTGTCTGGGCACTGTAGAGATCCCTGATGAGCAGTTGGAAACCACCATTCAATAAAGGAATGGCCCCCAGACAGCAAGCTGCCTCTCACCCTCTCCTAGCACCTTTGCCTTGGCAGGGCAAAACCTGCCCTAGTTTCACCAGGGTGCAGGTTATTTCATCAGTGAGGAACCTGCCCCAAGTGCCACCATGGGAGGGACAGCCTCTGTATTCCCCACAGCCTTTAGGCCTGGCTGGGCTGGGGAGGAGGTCTGTCAGGGCCGTCCTGGGTGCCTTACCTAACACATTCCCTACTATGGTGGCATGGAGATGAGGCCCTTCTAGAACAAGGAAACCAACCACAGAATGGGAAGGAGCACCTTGCGCCTTACAGAGATTTAGGTGAAAGTTCAAGGTAAAATCACAGGAGCTCAGGCTGGCAGTGCTGAAAGGCGTGGTCATCCTTTGGCAAGTTTAAGGAACATGGGTAATGTCCCACCTCTCTTCCCCGTCTCACAGCCCTGCACAAATCATCCTCCAGAAAGAGGACAGATTCTTCATCTCCGGGGCATTAATATGATGGATTGATAATGGGTGTCAAGGCTACTGGCTTTGGAGGCCAGCAGAGTTTGTTCTGGCTACCTCAGCTGTGGCATCTTTACCTTCCTAGCCACATTTTTCTCACCTATTTCTGAAGTTAATCTCGACCTCTAAAACTACTGTAAGGACAGAGTGTGATAGTCTGTGTGAAGGACTTCAGTAGAGCCGTCACATAGTTGGTCCTTGGTGAAAGCAGCCACTGTTGCTGCAGTTGCTTCCTCTTAGCACAGCAAGAAGAAATGAGGTCTTGGGGCCCAGCAAGGCCAGAGGTTAACACCGAGCACAGCACTGTGCCAGTTGCCCCGAGGCAACAAAGACCTCAAATCCATCAGCTTCTGTGTGGCTGAAGCCATGTTGGACCAGGCCAGCTATCTGACCCCAGGGTGTTCGGGCACCCATGCAGACTCAGAGAAGCAGGGTTGAGTAAGTGAGGATAATCAGCCTGTGCTGGGAGTGTACACACCTTGTAACACCCAGCATTAAGGAGGCTGAGGCAGAACTGCCATGAGTTCAAGGTCAGCCAGGGCTATGTGGCAAGAGACTCTACAAAATGAGAGAAAAGTGTTCATCTGGTCCTGCACCAGGCACCAGCATCATGACAGTGAGCAAAGTGGGCAGCCTGTCCCAAGGCATACAAAACAACTCCAGCCACATGGGGCCTTTACATCTTCCTACTGGACCCTTAAAAGCAAAAGGAAACAGATAGGAATAATTTAATGACATTGGGGTTTACTCTGTATTTTGATTTTTGAGAAAGGCTCATAGCCCAGGGTAAGCTCAGATTCTCTATGTAGGTAAAGATGACCTTGAACTCCTGATTCTTCTATCTCTATTCCCACTGTGGGGATTACAGCTATGCGCCACTCTACCTGGTTTTATGGACTGCTGAGGGTGTGCTTGACCCTCCTCTATCCATGAAGATGCCCAGACCCATTACAGCCATTTCTAAGTTTACAGCTCAGCAGCAGTGTGTTTCTTTTACGTGTACATGTTTGTGTATACGTGTGGGCAGATCTTAGAGATTAACATCAAGTGTCTCCTCAACCTTATGTTTCAAGTCAGCCTTTCATTGAACTTAGAGCTCATCAATCTGGCTAAACTGGCTGGCCTGCAAGCCCTGGGGTACCTCTTGGCCTCTTGTTTCTGCCTTCTGTGTGCTGGGATTACAGGCACTTGAGCAGCGACTGCTTGCTTTCTTTGTTTCTTCATTACTCGGTGTTGGGAACAGGGCTCAGGTCCTCTTGCTGTACAGCCATTACTTTATTGACCAAGTCATCTCCTTAGCTCCTGGTCTGTTCATTTTTTTAATGCAGCTTACAAAACAGAAGTTCATCCCCACTCCCTCTTTCCTCACTAAAGCTGTAGATTCCCTCAGGCCGCCAGCATTATGAGAGGTGTAAGGTGGAGTGGGGGTTGGGAACAATCGCTACCTGAGGCTCGCCAGTTAGCAGCTGTAGAAACAACTGCAGGATTCTCAGATAGAGTTTGTGTTCAGTGAGAATACAGCTGAACATCAACTAGTGGCAGGCCAGCAAGGCCCTGGAGGCTGATGGGAAGGAGTCCAAGGAGGGGTTGTGTTCTCCAG
Seq C2 exon
AAAGTCTCTCCAGATACACGAGCACCTACACGCTTTGTGGACGATGAAGAACTAGCCTATGTGATCCAGAGATACCGTGAGGTGCATGATATGCTCCACACCCTGCTGGGGATGCCCACCAACATGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691:ENSRNOT00000038602:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(15.3=100)
A:
NA
C2:
PF050198=Coq4=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]