DreINT0050875 @ danRer10
Intron Retention
Gene
ENSDARG00000104733 | coq4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
Coordinates
chr5:53769665-53773433:-
Coord C1 exon
chr5:53773340-53773433
Coord A exon
chr5:53770378-53773339
Coord C2 exon
chr5:53769665-53770377
Length
2962 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCACTGTCTGTCTGTTGCAGCCG
3' ss Score
10.45
Exon sequences
Seq C1 exon
GTGAGGTTGCTGTGAAATGGTTTGAAGCTGCACAAACTGGTCTCCCCATGTGTATATTGGGAGCAGCACTTGGACCCCTTCGACTGTCTGTCAG
Seq A exon
GTGAGATACAGTAAATGTTTAGGTTTTCAGGCTCTGTGGATAGCAATGTGGCGTAATGTTGCTATAACGGTAGATCATGCTTCAACAGTCACATTTGTATCAAACTAATCTAATCTAATTCTAAATCTAACCAGAATTCTACCACAACCCTTCTGCGTGTTTGATATACTGGAACATTTAACAATTTGTTTCCTTTTTTTAAATTTTTGTCTATGTTAAGTTGCTTTGACACATTCTTTATTGTAAAAGTGCAATAGAAATGAAGAACAAACTTGACAACTCAGCAGCACGTCTCGTCCCCTAGAAAGGGATTCAAATAAAATCGTTAAGTTAACATTATTGTGATAACTGTTTGAAGTCATTTTTATGTAGATGTTCTACCAAATTTTCATTTGGTTAAGTTTTTATCTATTAAAACAGCTAATTGTTCATGACAATTTTACGTGCTGAAGTTTGTTTTTACATTAGTCAACATATGAAGTGAATCATTACCTTTCATCAAAGTTGTTATAAAACTATTGAACAACAACCCATTACTGTCCTACTGTAGGACAATTTTGAAAACATTTTGGATTCACTTCGAATGTTGACTACTGTATAATTAAATGGAATTTTCCATAACAGGGAAACGGCAAATGCATACTTGACTTTCCTGCAAAATTTGTCTGTGATTACAACCATGACTCACTCACATTTTCTATTTGTATGTTAGTTTTTGTTTTCGTTCATCTTTCATTATAATCATTGTGGAAGGTTTCATTATGTTAATCTTAGTTCTGTCATTATTTTTGTTTTGTTTTGTACACTACTAGCTTTCTCCTTCCTCGTAGTGTAGGACATTCTCTCTGTGAATGTTAGAAAACGGTTTGTATGTTCCGCAGTAATTGTTACTGTATCTGGCAGATAAATAAGAAATTACTTAATATTTCGCCTTTTAGTTTATCATGACTATTGTCTATAATAAACCTCATGTCATATGCCACAAAAGTATTCTCAAGAACATGTTGTGTAGGTTGAGATAGCTCACCCAAAACTGTATATTCTTTCTTTATTTAATCATACTCCACAAACCTGTTTGACTGTCTTTTTCTGTTGAACACAAAGTTCTTTTGAAAAATGTTGTAAACCTGTAACCATTGACCTCCATTATATTTCTTTTTCAATGTTTTAAAGGGTAACAAAAAGATCTTTTGTGTTCAACTGAAAAACAAACCTCATAAACCTTTGGAACTACTTGAGGTTGTGTACACTTTTTGGGTGAATTATCCATGTATGTTTCACAATATTATTTACATTTATATTTCACCACAACTCCTTTCTGTATATACACTCACCGGCCACTATATTAGGTACACCTTACTAGTACCATGTTGGGCCTCCTTTTGCCTTCAGAACTGCCTTAATCTTTGTGGCAAAGATTCAACAAGGTACTGAAAATATTCCTCAGAAATTTTGGTCCACGTTGACATCCCAAAGGTGTTCTATTGGATTAAGATCTGGTGACTGTGGAGGCCATTTAAGTACAGTGAATTCATTGTCATGATAATGAAACCAGTCTTGAGATAATTCATGCTTTATGACATGACGTGGTATCCTGCTGGAGGTAGCCATCAAAAGGGATGAACATGATCAGCAACAGTATCAGTAGGCTGTGGTGTTGACACAATGCTCATTCGGTACTAATGGGCCCAAATTGTATAGAAAACATCCCCTACACAATTACATAATCACCACCAGCCTGAACCAATAACACATGGCAGGATAGATTCATGCTTTCATGTTGATGACGCCAAATTCTTACCCTACCATCGAGACAAATCAGACAAGATAACGTTTTTTCAATCTTCTATTGTCCAATTTTGGTGACCCTGTGCAAATTGTAGCCTCAGTTTCCTGTTCTTAGCTGACAAGAGTGGCACCGGTGTGGTCTTCTTCTGCTGTAGCCCCTCAAGGTTCGATGTGTTGTGCATTCCAGGATGCTCTTCAGCACACCTCTGTTGTAAGAAGTGGTTATTTGAGTCACTGTTGGCTTTCTATCATTCTATCAGCTCAAACCAGATTGGCCATTACCCTTTGAGCTCTATCATCATCAAGGCATTTGTGCCCACAGAACTGCCGCTCACTGGATATTTTCTCTTTTTCGGACCATTCTCTTTAAACCCTGAGATGGTTGTGTGTGAAAATCCCAGTAGATCAGGAGTTTATAACAGCCCATCATGCACCAACAACCATGCTGTGTTCATTCATTCATTCATTCATTTTTTTTTCGGCTAAGTCCCTTTATTAATCTGGGGTCGCCACAATGGAATGAACCGCCAACTTATCCAGCATATGTTTTCTCTGGGGAACATCCATGCACACTCATTCACACTTATACACTATGGACAATTTAGCTTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCAGAGGAAACCCACGCAAACGCAGGGAGAACATGCAAACTCCACACAGAAACGCCAACTGATCCAGCCGAGGCTTGAACCAGCACGACCTTCTTGCTGTGAAGAGACAGCCCTACCTACTGCGCCACTGTCTCGCCTATGCCATGTTCAAAGTCACTTAAATCACCTTTCTTCTCCACTCTGATGCACAAGCTGAACGGCAGCAGATCGTCTTAACCATGTCTACATGCCTAAATACATTGAATTGCTGCCATGTGATTGTCTGATTAGAATTAACATTAAGATCTGCGTTAACGAGTAGTTGGACAGGTGTACCTAATAAAGTGGCTGGTGTTTGTGTGTGTATATATATAATTTTTTGGACATAACTAAATATTTAAGCACATTTTCCTGTTTTCCTTCAAAGGGTCATCTACAGTAATGTAAAATATCTTTTATACAGTTGATGGTATTTGTTGTACTTGTATGCTAATTGAATGAAAATTCCTAACATTGCACTGTCTGTCTGTTGCAG
Seq C2 exon
CCGCCTACAGTTGCTCGGTCAGTCTCTTGGACTTTGGGCCCTGCGCAATGGTGGTCGTGCAAGATGTGTTTTGAGCATCTACTATGAACGGCGCTGGGAGCAGACTCTTGATGAACTCAGACACGAGCTAAACATTGAGGAACCCCCAGTTAGTCTAATTGCATCAATCAAGAACTCATCTTCAAAATCATACTATTTCTAAATAACAGAAGGAAATTTATTTGAGCTTACCACTTACATATAACTCCTTTTCTTCCACCTGCAATGGCCTAAACATAAATCTAAAGAAAGTTATTCTGACGTAAAAAGTTTTATATAAAAGGTATCTGTGTCTTTCAAGATATTTATACTGCACTAACATTGACCTCTTGATAACATGCACTGGAGGTATACAAGTGCATGAGTAAAAAAAAATGCTATTATAAATCATATTGAGATAAATTGTCTAAATTAATAATACAAAATAATAATGGCAAAAATGTTGTGTAACCTGAATCATTAGAGATGATCCCCTAAATTAAGATATGCTTTGTAAAAAGAAATTTGCCATTGTTTTTTGAAAATGATATCCCTCTTTTCGGACAACTTGATGCAGTGCTGTAAGGTTCCTTCTGTTACCTGAATATGAAAAGCCAATATGGGGATACAATACTTTAAAGAAGAAACATTTTACATTTGTTTGGTTTCTAACATGAAATCCTTGCAGAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104733:ENSDART00000169270:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(14.0=100)
A:
NA
C2:
PF050198=Coq4=PD(21.6=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]