GgaINT0124429 @ galGal4
Intron Retention
Gene
ENSGALG00000004927 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr17:4983785-4984280:-
Coord C1 exon
chr17:4984187-4984280
Coord A exon
chr17:4983933-4984186
Coord C2 exon
chr17:4983785-4983932
Length
254 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
3' ss Seq
TTGTGTGGCCTTTGTTGCAGAAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTGAGGTGGTGGTGAAATGGTTCGAAGCCGTCCAGACGGGGCTGCCCATGTGTGTGCTGGGAGCAGCGTTTGGCCCCGTTCGTCTCAATGCACG
Seq A exon
GTAGGCACCGATGCTGTCTGATGAGGTTCCACGTTAACCTGAGTTCTGATCCTGGGTTTCTGCTGGCTGTAACCTTCCCACACAGAGTCCCATCCCATGCCTCAGTTTCCCCTGTGAGATAAGCAGGAATGCTGGAAGGGTGCAGGGCCGTAGGGTTTGCCTCTGCCCGGAACGGGGACTTGGAGGAGGGAATAGAAAACCAAAGGTGGAAATGAAAACAAAAAAAGCATTGTGTTGTGTGGCCTTTGTTGCAG
Seq C2 exon
AAAGCTGCAGGTCCTGGCCACGGAGCTGCTCCCATGGGCGGTCCGGAGCGGGCGCAACGCCAGCTGTGTCCTCAATGTCTATTACGAGCAGCGCTGGGAGCAGAGCGTGGAATCCCTGCGGGAGGAAATTGGCATCTTCCCCCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927:ENSGALT00000007881:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(14.0=100)
A:
NA
C2:
PF050198=Coq4=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTGGTGGTGAAATGGT
R:
GGGGGAAGATGCCAATTTCCT
Band lengths:
237-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]