RnoINT0040871 @ rn6
Intron Retention
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8356653-8357871:+
Coord C1 exon
chr3:8356653-8356746
Coord A exon
chr3:8356747-8357130
Coord C2 exon
chr3:8357131-8357871
Length
384 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCCGCTGACCCTACCTCCAGGAG
3' ss Score
9.57
Exon sequences
Seq C1 exon
GAGAAGTTGTGGTAAAGTGGTTTGAGGCTGTGCAGACTGGCCTTCCCATGTGCATCCTGGGAGCACTCTTCGGACCCGTCCGTCTCCGTGCTCA
Seq A exon
GTAAGTTTCCTGGGGTCGGGGGAGACCTCAGAAGGGCCGGGGCTCCAGGACAGAGAGATGGCTTACAGGTGCTTTATGCCTCTCCAGAAAAAAAGGATGGGAGAACGAGGCAGCAAAGGAAACTGAGTCGATGAAGCCCAGGGTCTCTTGGGCCAGGCTTCAAGGGCTGGGTCAGAACGAACAGGGTCTGCATGAAGATGCATGCAGTTTCTGGGATTGGACAGCCCTACATTTAAATCTGAGCTTCATCGTTCAGGGTGTATGCTATGAGGTGTGGGAGCTTTCCTCACTGAAATCTGCTTAGGTGTGAGGGAGGGTTGACTGAGAACTGAGTTCGTTTGGGAGCCTTATGGCTTTTCTTCTCTCCGCTGACCCTACCTCCAG
Seq C2 exon
GAGCCTCCAGGTGCTTTTCTCAGAGCTGATCCCTTGGGCGATTCAGAACGGGCGCAGGGCCCCATGTGTCCTCAACATCTACTATGAACAGCGTTGGGAGCAGCCCCTGACAGCCCTACGGGAGGAGCTGGGCATCAGTCCTCCCCCAAAACACATCCAGGGCCTGGCCTAGCCTTAGCTGCCTCCCAGGGAGGATGGAGCCTTCCTTTCCACACACTGCCTTCCTGGAGACAAAAGAGCCCTTGGCTGCTTGTGTTTCTTCTCATTGAACCTTGAACTCAGAGTGTCACTTATCATAATTTTTATAGTCACTGCTGCCATGTGCCTTGAGGGCCTGCCCAGGAAAGAGAGGTAGGGCAGTGAGGCCCCAGGGTGCTGTAAGCTATCTGGAGAGAGCAGTACGTGTGCCTGGAGCAGCCATCTTGGATCAGTCGGGATTGCTCAGGTCTGAGGCCCCTCTTCTGGACGGTGATTCAGGCTCTCTTTGAAAGCTTGACTACTTACTACATCATGTTGCAAAGCACTGAACCAAGTGGTGGGAAAGAGAAGGCATCTCTGGTGTCTGAATAAAGCTTCCATCAGGCCTAGAGTCAGCTGGTCATCCTTGGCCTAGCTCCCTTTACCTCAGGTACTGGTGAGGGGAATTTCGTCTCAACTGGACTCCAGTTGGTTGTCACTGTCATTGGGTCTGAAGGCAAGCAGTCTACGAATCAAGTCCCCAGCCAACAAGAAATAAGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691:ENSRNOT00000038602:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(14.0=100)
A:
NA
C2:
PF050198=Coq4=PD(22.5=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGGTTTGAGGCTGTGCA
R:
TGAGAAGAAACACAAGCAGCCA
Band lengths:
346-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]