DreINT0051767 @ danRer10
Intron Retention
Gene
ENSDARG00000100506 | crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
Coordinates
chr22:23485353-23486622:-
Coord C1 exon
chr22:23486457-23486622
Coord A exon
chr22:23486272-23486456
Coord C2 exon
chr22:23485353-23486271
Length
185 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CTGCCTTTATTTCTATGCAGGCA
3' ss Score
9.15
Exon sequences
Seq C1 exon
AAAAATCCTTGCCAAAATGGTGGCATCTGCTTTTCTTCATGGGATGATTTTACTTGCAACTGCCCTCCTAACACATCAGGACAACACTGTGAGGAGGTGAGCTGGTGTGACCTCAACCCGTGCCCACCACAAGCAATATGCCGGGCCCTAAACCAGGGCTATGAAT
Seq A exon
GTGAGTATTTTATGACACCTAATCTCATGTGTATGGAACTCGACTTCTTAATTCAAGTCAAGGGCTATAAATTGTAGCAAATTTGCTGAAAACGTGTTGTAAGCCTCAAATGAGATTGTATTGCAAATAGTTATCTTCATCCAAGAAGTTACATCTAAACTATTTCTGCCTTTATTTCTATGCAG
Seq C2 exon
GCATTTCAAACGTGACTTTCCAGGAGAACACCACACTTGTATACCAAGGCAATGGGCTGATATCCCGCCATCTGACCAGTATTGTCTTTAATATCCGTACACGTAAGCGCAATGCCATAGTGTTGCATGCAGAGAGTGGATCAGAGTTTGTAACTGTATCTCTTCAAGATGGATTTCTGGTTCTTGAGCTTCTAAGTGGACCTACTACTTCATCCTCATTGTCACCAGTAACCCTGCACAGCCCAAGGGTAGTCGCTGATGGGGAATGGCATGTTATAGAGCTGTTAATGGCCACTCCAGGGTCTAACAGCTCCCACTGGATTATGGTCCCCCTAGATGAAAAAGATGAGCCTACTAAATCAGACTCTATGACCGGAAATCTAGACTTCCTCAGAGAGAGCGTGTACATCATGCTAGGAGGACTAGGCCCTGATTCTGGCTCCAATCTCATTGGTTGCTTGAGTAATGTTGAGATTGGTGGAATCGTGCTTCCGTATTATGGACAGACTGAGGTGAGATTTCCACGCACACAGGAAGAAATGTTCAATAAGATATCCGAGGAGCCTGTTCAAACCGGCTGTTTCGGGGAGGTGGTGTGTGAGCCCAATCCCTGCCTGCATGGAGGCATCTGTGACGATCACTTCAACCTTTTTCACTGCTTCTGTCTTCCTGGCTGGGGCGGTGATCACTGTGAGCTGAATACAAACACCTGCGCCTCCAACCCCTGTCGACATGGATATTGTAGTGTGCAGGACCTCACATACAACTGCACATGTGAGGACGGATACACTGGCACCAACTGTGAGATGAAGGTGGATGCTTGTGCTGGGCACAGGTGTGCTAATGGAGCGACCTGCTTGCGTGGCTTCAACATGTATTCCTGCCTCTGTACCGACAAGTTTACTGGGCCACTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100506:ENSDART00000166915:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=42.7),PF0000822=EGF=WD(100=10.1),PF0000822=EGF=WD(100=9.8),PF0000822=EGF=WD(100=10.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAACTGCCCTCCTAACAC
R:
CCACTCTCTGCATGCAACACT
Band lengths:
252-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]