GgaINT0034837 @ galGal3
Intron Retention
Gene
ENSGALG00000002287 | CRB1
Description
NA
Coordinates
chr8:2520490-2523854:-
Coord C1 exon
chr8:2523689-2523854
Coord A exon
chr8:2521394-2523688
Coord C2 exon
chr8:2520490-2521393
Length
2295 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGT
5' ss Score
5.12
3' ss Seq
CAATTATTATCTTTGCACAGGTC
3' ss Score
7.45
Exon sequences
Seq C1 exon
TCCAGTCCTTGCCACAACGGTGGTGTATGCTATTCAATCTGGGATGACTTCACTTGCACTTGCCCCCCTAACACAGCAGGGAAAGCTTGTGAGGAAGTTAAGTGGTGTGAGCTTGGGCCCTGTCCTCATGAAGCACAATGCAAGCTGGCGCACCAAGGATTTGAAT
Seq A exon
GTAGGTAAATTTCAGTTATTCCTGTCATCTTTGGAAATTAGAAACAATTGAAATTTTCATCAATATTTCCTTAAAACCAAATATTTACTTATTTGAAAATTCAATGCTATTTCTATATTATGTAGGTTGCTCTGAATGTAATGCCTCCTATTTTATTATCACGGAAATGACAACAGTTAAAGGGAAGGCAGTAACAGTATTTAAGGGAGCAAATTCTCACCTACAAAGCACCGTTCTTCAACACAGTCACCACCAGTAGCTGTGCATTTTCATCAGTGATGAACAAGAGCCTGCATGCTGCGTTTGTGAAAATCTGCACCAGTGGAGGTGACCTGCTGTCGCTGTCACCGCTGCTGAAATGCACCACCCCATCACTGCACTCTCATCCACTGTTTGGTCTCCATAAATGTTCAGCAAGCATCAGTGAATGTCATATTTTCCCTGCACAGAGGAATTCAGGGATACACCTTTGCTTCCTAAACACTTTCATATCAGATGCCAATGTGTCAGACTTCCTCTCTGCTTCTGTCTGTTGCACAGCAAAAAAATGTAATGGGATATTGGCAGGAGGGCTCAACCTCTACTGTCATACCACCACCATCTGCCTCTGACATCACTGGCCAATGTAATAAAATAAGAGGCATTACTTTCGGAGCAGCCCCATATAATAGCAGAAATATCAATAATAATATCAATTGTAAGTTATATTAATGAGAATATCCTGCCATATCGACCTCAGAAATTTTCAACTAGACCCAACAATGCAGGCACTGATGTTTACATAACCTTTGCTTTTGTCTTATCCAAGAGAGCATGTCAGAGTTGTAGAATAGATCGCAACATTGCCAGACTGCAAGTGTACCCCACACCCCTCCACTGCAAAGAGATAGGAAGACATCCAATGTTGGAGCAACCTTAGGATGTTCTCCATCCTCCTGAAGATACAAGTTACATGACATAAATTGCATCACTTGATTTTCTTCAATGTTAATTATCTTTGTAGAAAGTCACCTTAACTCCAGCCATACAGTTATTAAATTAGTATCTTGGCAAGAAGCACTTGCATGCCAAGTGGTCTATTTGTTTGAAAATTGATAGCCACTGGCTGACTGAACATAAGCCACCCTGCACATCTTTCCTTCTCTTTCTTTCTCCTTACCACCCTGAACTGGAGCAGAATATAAGAAGAAAGTAAGAATTTTGAAGCAATATTTTCTGGTTTTGCTAACAAACAAAATTTCTAACTATGCTATGAAGGAAGAGAAATATATACAGAGTCTGTTAGAGTGGCTGATTCTTAGGAATGAGAAGGTTCATCAACAGAAGATTTCTATCATGGGCAGTTTGCATGCAGATCAATATGATGCTGTTTTCATTGAGATTGTTAAAATCAGCACTGCAGCACATGTAAATATTTACAGCTGAAGTTAAAATAATTGCACCGTCTCTAATGCACATGTTTAAAGATGGCATCAAATATGCTTTCTCAAAATTCACTTTTACATTTTAGGAAAACTTGAACTCCAACTATACAAAAAAAAAAAAGATAGAAAAAAAAATCAAAGCAACAAACCAAAACCTAATCATAAAAAACACCCACAACAAAAACACACACACACACAAATTACACAAGAAGAAACACAGACAGAGAGAAAGCTTCGAAAAGAAGCTGATGCAGGAAGAGTCAAATAACAACAAAAACTTATACTCAGTGGCACAGATGACAGTAAAAACCTCTTCCCAAATACTATGTAGAAAACATCAGTGCAGTTACGTAAGTCAAATTTGGCTACACCTGTAAGCCTATACAAAGCTACTGAGCCCCATCAGCACCTCAGGCAAACCAGTGCAGACCCACTGGCTATGGTAGCCTGGTCCTTAACTATTATTTCTTTGCTAAGTGCTTATTCTGGGCTACCCTCATGAGAAGAAGCAAGGCTCAACTATTATCTACACTTGCTTGTTTAGATTAGCTTACTGGTTTTAGTAGACCTACTTCTGATTTACATTACAGTAAATAAGGCCAGAGTCATCGGATCAGGGTCACTGTCCCCCTTTCCTCGTTAAAGGGAAATGAGCTGGAAGCTTTAGGATTAGAGTTTCAGGTAGCACCGCCCTGTAATCTTTGCAGCCATAAGAGGCAAGCAAGGATAACTGGGACACTGATGGAACTGGATTGCTTTTCAGTAGAAACAAAAGGACTTAAGTGATGGGGATCATGGGGCACTGAAGAGATACTGTCCAGGTGGACTGGTTTAAAGCTGGCCTGGTTTCTCAATTATTATCTTTGCACAG
Seq C2 exon
GTCTCGCTAATGCAGTGTTTAGCGGCCGAAGCAGTGCTATATTTTACAGAAGCAACGGGAATATCGGCAGAGGCCTCACCAATATCGTGTTTGGCTTTCGAACTAGGGACAAAAATGTGATACTGCTGTATGCGGAGAAGGAGCCTGAGTTTGTTATCATCAGCATTCACAACTCCAAACTGGTCTTCCAACTGCAAAGCGGCAACAACTTTTACATGTTGACCCTCACTAGCTCGCTGACCGTGAGTGATGGGAAGTGGCACCAAGTTACGGTCTCCATGGTGGAGCCCCTGTCTCAGTTCTCGAGGTGGCACATGAATATCGATAACAAGGACGCTGCAACCAGCACAACTGCTACCGGAAGCCTCAACTTTCTACGAGAAGAAACAGACATCCATTTGGCTGACAAGGCTTTTGACAATTTGGATGGCCTGAGAGGATGCATGAGCACCATAGAAATCAGTGGCATTTATCTCTCCTACTTTGAAAATGCTGACATCCTGACTAAAAAACCTCAAGAGGAACAATTTCTCAAAATATCTGCAAACCCTGTTCTTACGGGCTGCTTACAGGAGGATGCCTGCAGCTCAGAGCCCTGTATGCACGAGGGGACATGTGAAGACTTGTACACCTCCTATCGCTGCACGTGTCGCCCGGGGTGGGTGGGTACCCACTGTGAGACCAACATCGATGAGTGCTTCTCCAACCCCTGCATTCATGGAAACTGCACAGATGGGATCAACTCTTATGAGTGCATTTGTGAACCTGGCTACACAGGGTTAAACTGTGAAGAGGATATAGACTACTGCCAGGGCCACCAGTGTGCAAACGGAGCCACCTGCATAGATGGGATTAATGGATATTCATGCCTGTGTGCTGGTAACTTTACAGGAAAGCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287:ENSGALT00000003596:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=41.4),PF0000822=EGF=WD(100=10.3),PF0000822=EGF=WD(100=9.9),PF0000822=EGF=WD(100=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]