DreINT0051875 @ danRer10
Intron Retention
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26908577-26909102:+
Coord C1 exon
chr22:26908577-26908756
Coord A exon
chr22:26908757-26908853
Coord C2 exon
chr22:26908854-26909102
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TTGTGTGCCCCCTTCCCCAGCAG
3' ss Score
7.52
Exon sequences
Seq C1 exon
ATGAACATGTCTCCAACACGAATTGCTCCAACGCAAGGGATGCTAGGAGCTCACGGAGGGAACATGGTCACGCAAACGCCCAACCAGACGCAGTTCATGACTCAACCACCGTTTCCTGCTACCACCAACACCATGAACGTCAACATGGGCCAGCCCAACTCGCAGACACCAGTTTCGCAG
Seq A exon
GTGCGTCATTGCACTCATATTCACCAGTGACGTCGTTAGGCACAATAGCTTCCCCTCTGAACATGTTTTGTCCCTGCTTGTGTGCCCCCTTCCCCAG
Seq C2 exon
CAGCAGCCGAACGCTAACCTCCCCCTGAATGCACTTGGCCCCTTGGGCCCTGCGCTAGGCTGCCCCACGCCCCCTCAGGCTCCACTGCGCGCCACACCGCCCCCCAACGCCACCGCCGCCAGCACCACTAACCTGCCAGCAGCACTGCAGCCCTCCACACCCACCCCCGCCCCTGCCCAGGCCACCCCGCCGCACATGCAGACCCAGGCTGAGCTGCCCATCCCTGGCCAGCAGCACCCTGGAACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609:ENSDART00000158756:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGAGCTCACGGAGGGAAC
R:
AGTGCATTCAGGGGGAGGTTA
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]